Chaetura pelagica (chimney swift): 104388134
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Entry
104388134 CDS
T08631
Symbol
BARD1
Name
(RefSeq) LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104388134 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104388134 (BARD1)
04121 Ubiquitin system [BR:
cpea04121
]
104388134 (BARD1)
03036 Chromosome and associated proteins [BR:
cpea03036
]
104388134 (BARD1)
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104388134 (BARD1)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104388134 (BARD1)
Ubiquitin system [BR:
cpea04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104388134 (BARD1)
Chromosome and associated proteins [BR:
cpea03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104388134 (BARD1)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104388134 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_4
Ank
zf-RING_6
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
zf-C3HC4_2
zf-C3HC4
ANK_LRRK2
NIBRIN_BRCT_II
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
104388134
NCBI-ProteinID:
XP_009995262
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MAIGLRKAEYTTLQTSLAGFHPGITAWSGTGVLREPVSLGQCQHVFCLSCVGDCVGTKCP
VCHMPAWVQDAHINRQLDHIIQLCRQLRHLLGMDTSDSTEGMSTPTESDFGKKCKKEQIK
MWFSPRSRKIRCTLNKSQPESKSNDLCQDTSSVYDFLPSPPHEKPSKPTRKPTQRQSKKM
KRKCLADINKVWSFEKPEQKGVEEKTPKEKCVTICSQPLVLCTPEPNSPEETLHFFSVKT
ADDRKNLESVEVLPQVKVSEKKDNSAVVCPAQVSKEKKCATETSLPIENETTPLKRGREQ
PRLPVTSQSKRPRTERSSTEKSVRQVDCSEDLPQGYPISPTTDKTPVQVSSSGSKVTDTG
VKTRSSTVFQAINSRSLSKCPSTPSKLKTCNQVGIPHSPSVLKSPGGNTIARRNYKGETL
LHLASIKGDLATVEQLLKNGADPNVKDNAGWTPLHEACNHGHKEVVELLLQFKALVNTTG
YQNDSPLHDAAKNGHVSIAELLLLHGASCDAVNIFGLRPVDYAEGEKMKSVLMLPVKNQS
LSLNQSSEVLSSSQPRDGPLGILGSSLSSKQQKLLDQLATVLKARRYTEFNSRVTHLVIP
DVPMPSTVKCMMAVLTGCWVLKFEWVQACLQTTVREPEEKYEIQGGPQRGRLNREQLLPH
LFDGCYFYFLGSFKHHQKSDLMELVKAAGGQILVRKPKPDSDVTQTINTVAYHAAPTSDQ
RFCTQYVIYDVSSQFKPEKINQGKVWMAPSSWLIDCVMSFQLLPVK
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcaattggtttaagaaaggctgaatacaccaccctgcaaaccagtttggcagggttt
caccctggaatcacagcatggtcaggcaccggtgtcctgcgggagcccgtgtccctgggg
cagtgtcagcacgtcttctgcctatcttgtgtgggcgactgcgttggcacaaagtgcccg
gtttgccacatgccagcctgggtgcaagatgcacatataaaccggcaactcgatcacatc
atccagctttgcagacaactgcggcacctcctgggtatggacacctcagactcaacggaa
ggtatgtcaacaccaacagagtcagactttggaaaaaagtgtaagaaggaacagataaaa
atgtggttcagcccaagaagcaggaagattagatgcaccctaaacaagagtcagcctgag
tctaaaagcaatgacctttgtcaagacacatcttcagtttatgatttccttccttcacct
cctcatgaaaaaccctctaagccgacaagaaaaccaacacagagacagagtaagaagatg
aagaggaaatgtctagcagacattaacaaagtgtggagctttgagaagcctgagcagaaa
ggagttgaggagaaaactcccaaggaaaagtgtgtgaccatctgcagtcaaccattagtc
ttgtgtactccagaaccaaacagccctgaagagacacttcattttttttctgtaaagaca
gcagatgacagaaaaaatctggaaagtgtggaagtgttgccacaggtaaaagtatcagag
aagaaagataacagtgcggttgtatgccctgcacaagtcagcaaagaaaaaaaatgtgct
acagagacatcgctgccaatagagaatgaaactacacctttgaaacgtggaagggagcaa
cccagacttccagttacttcccagtctaaaagaccaagaacagagaggagcagtacggag
aagtcagtcagacaggtagactgctcagaggatttacctcagggttacccgatctcccca
acaactgacaagacaccagttcaggtttcttcctctggatcaaaagtcactgacactgga
gtgaagacaagaagctccacagtctttcaagcaataaatagtcggtcactttcaaaatgt
ccctccaccccctctaagttgaagacctgtaatcaagtaggaataccacatagtccttct
gtgttgaagtcccctggtggtaacacaattgccagaagaaattacaaaggagagactttg
ctccaccttgcttctattaagggtgacttagcaactgttgaacagctgctgaaaaacggg
gcagatcccaatgtcaaagataatgctggctggacaccactgcatgaagcatgcaaccat
gggcacaaagaagtggtggagctgttgctgcaattcaaggcactggtgaataccacaggc
tatcagaatgactcgccactccatgatgctgccaagaacgggcacgtgagcattgctgag
ctgctgcttttgcatggtgcctcctgtgatgcagtgaatatatttggtctgcggcctgtg
gactatgcagaaggtgaaaagatgaaatctgtgctaatgttaccagtgaagaatcaatca
ctttcacttaaccaatcctctgaggttctgagctccagccagccaagagatggacctctt
ggtatactggggagcagtcttagttccaaacaacagaaattgctggaccaactagcaaca
gttctgaaggctcgaaggtatactgagtttaacagcagagtaactcatcttgttatccct
gatgttccaatgccaagtactgtcaaatgcatgatggctgttctgactggatgttgggtc
ctcaagtttgaatgggtacaagcctgtctgcaaaccacagtacgagagccagaagagaag
tatgaaatccaaggtggcccacaaaggggtcggctcaacagagaacagctgctgcctcac
ttgtttgatggatgctacttctattttttgggatctttcaagcatcaccagaagagtgat
cttatggagttggtcaaagcagcaggaggacaaattctggttagaaagcccaaaccagac
agtgacgtgacacagaccatcaatacagtggcttaccatgcagcccctacttctgaccag
agattttgcactcagtatgtaatctatgatgtgtcttctcaattcaagccggagaaaatt
aatcagggcaaagtctggatggccccttccagctggcttatagactgtgtgatgtcattt
cagctcctgcctgtaaaatga
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integrated database retrieval system
