Chaetura pelagica (chimney swift): 104388477
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Entry
104388477 CDS
T08631
Symbol
SCAF8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpea03021
]
104388477 (SCAF8)
03041 Spliceosome [BR:
cpea03041
]
104388477 (SCAF8)
Transcription machinery [BR:
cpea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104388477 (SCAF8)
Spliceosome [BR:
cpea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104388477 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104388477
NCBI-ProteinID:
XP_009995652
LinkDB
All DBs
Position
Unknown
AA seq
1307 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLPTTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFDFGEEPEQNEEPKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQ
PQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVETNVDDSMDIQQQDMDIDEGQDVAEE
VFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRS
YSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIES
INMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVD
LGVSYIPWEKVKLDDLDGFAEGGMIDQETVNTEWETARSSESAKENTQTTQSAAVDKSTV
ITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNPS
QPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTSLVLPVGTV
TSNLATPTLSAGTVFNPLPINKPEADEKGSHVTDLQIPSSENNRSVQSDVSSSSGLVGGV
QPPSVSSSSGLTGEGQPPIVSSSSGLAGGVQPPSVSSNSGLVGGVQPPTVSSSSGLGGGV
QLPAVSSSSSLAGGVQPASIPSSSGLMAGVPPPNVSSSSGLLAGVHPPSVSSSPGLLTGM
QPPSVSSSSGVLAGVQPPSVSSNSGLLLMPPPSVASSSGLIGVPPPNISNSSGLLAMQHP
AGVQNMPHLNINSQRMPGMPLIDIRPGLMPHSPGPRFPLGMPPQRSIPPPAILDPSLHPP
PRGPFPPGDIFNQTERPFGTPGRQNIDSISRFPPVENRDNLNRPSTVDVRDSVGRPPVDP
REGIGRPPVDGREHFARPHVDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHH
AFPIYGGPKGFHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWERQRDRDD
RDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQ
PPTAQVQDDPELYEKLASSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcatgttgtacag
agtgttgagaagttcattcagaagtgcaaaccagaatacaaagtacctggtctgtacgtc
attgactccattgtgagacagtcccgacatcagtttggacaagaaaaggatgtgtttgct
ccaagattcagtaataacatcatcagcactttccagaacttgtaccgttgtcctggggat
gacaagagtaaaattgttagagtgctaaatttatggcagaagaataatgtgttcaagagt
gaaattattcagcctctcttggatatggcagcaggaattcctcctcctgttgtgacccca
gtcttgcccaccactacagctgctatgagcaacaatacaccaggaacacctgtgactcca
gttactccagccaatgtggtacagagtttacctgatccttgggtgtctcagattgctaat
acagatactcttgctgctgttgcacagattttacagagtcctcaaggccagcagcttcag
cagttgatacagacactgcagatacaacagcaaaaacctcagccatcgctacttcaagcc
ctggatgctggtcttgtcgttcagttacaggcccttacagcacaacttacagctgcagct
gctgctgctaacacacttaatccactggaacagagtgtctcttttaataagaagctgatg
gacaggtttgattttggggaagaacctgaacaaaatgaagagcctaaaaaggaaactccc
acttcccaactgcctttagtaccagaatctgtgaacaactcactgtttcaccaactagct
gaacagctacagcaacaaaatttagaacatctcagacaacagcttctagagcaacagcag
cctcaaaaggcaagccctgaggagaatcaagaaggaaattttggttcagagcactctgca
tcaccatcacaagggagtagtcaacagcagtttttagaagtagaaacaaatgtagatgat
tcaatggatattcaacaacaggacatggatatagatgaaggacaggatgttgctgaagaa
gtttttgaacaagaggagaagaagtcagctgttcgttcaagatcaagaacacgttcaaga
tctcgttcaaggtcaccaagaaaacgaaggtctagatcacggtctggttctcgcaagcgt
aagcaccggaaacgttcacgatcaagatcaagagaaaggaagagaaagtcatctcgatca
tattctagtgaaagaagggctagggaaagggaaaaagaacggcagaaaaagggactgcct
cctatacggtcaaaaacactaagtgtttgcagtactactctttgggtaggtcaagtagac
aagaaggctacacagcaagatttaactaacttgtttgaagaatttggacaaatagagtca
attaatatgattccaccaagaggttgtgcttatgtctgtatggttcatagacaagatgca
tatcgtgctcttcagaaacttagttctgggtcctataaaattggatctaaaattattaag
attgcctgggctttgaataaaggtgtgaaaacagaatacaagcaattctgggatgtggat
ctgggagtttcatatattccttgggagaaagtaaaattggatgatttggatggctttgct
gaaggtggcatgattgaccaggagacagtaaatacagaatgggaaacagccagaagctca
gaatcagctaaagaaaatactcaaactacgcaaagtgctgcagttgataagagtacagtt
attacaacacagacagaagcttacacacaaccagtcactatgctgcagattccagtagct
ccggctgtgcccgctgttagcttggttccacctgcatttcctgtcacaatgtctgtccct
cctcctggctatagcgcaattcctcctcctcccttcttgcgggcaagtttcaacccttca
caaccacctccaggttatatgcctcccccagttccacctgtggtcccaccacctgttgtc
ccaccacctgttgtcccaccagttgttccaacacctttagtacagcctccattaccaatt
gcacaagagacaatgaaggatgttccctttactagccttgttctaccagttggtacagtt
actagcaatttagctactccaacgttatctgctggaactgtttttaaccctctgcctatc
aacaaaccagaagcagatgaaaagggatcacatgttacagaccttcagattccttccagt
gaaaacaatagatctgtgcaaagcgatgtctcgagtagctctggacttgttggaggagtg
cagccacccagtgtttcaagcagttctgggcttactggagaagggcaaccacccattgtc
tcaagtagctctggacttgcagggggagtacagccacccagtgtttcaagcaactctgga
cttgtaggaggagtgcaaccaccaactgtttcaagcagttctggtctgggaggaggagtg
cagctacctgctgtctccagtagctcttctcttgctggtggagttcagccagccagcatc
ccaagcagctctggacttatggctggagtgccaccaccaaatgtatcaagtagctcaggg
cttctagctggagtgcatccgcccagtgtctcaagcagccctggccttctgacaggaatg
cagccacccagtgtctcaagcagctcaggagttctggcaggagtacagccaccaagtgtc
tcaagcaactctgggcttctcttaatgccaccacccagtgttgcaagtagttctggactt
attggagtgccaccaccaaatatttcaaatagttctggacttctggcaatgcagcatcca
gctggagttcaaaatatgcctcatttaaatattaatagtcaaaggatgccgggaatgcct
ctcatagatattcgtccaggcctaatgccccattcacctggaccaagatttccattagga
atgccacctcagcgtagtattcctcctccggcaattcttgatccatctcttcacccacca
cctcgaggtccttttcctccaggagatatttttaaccaaacagaaagaccttttggaacg
ccaggaagacaaaatattgatagcatttctcgctttcctccagtggaaaaccgagataat
ctgaacagaccatctacagtggatgtcagagattctgttggacgaccaccagttgatcca
agagaggggataggaaggcctccagtagatggcagagaacactttgcaagaccacatgta
gacatgagagaaaattttggaagaccaggtatagataaccttggtcgaagagagcatttt
ggtttcaattcagacaagcactggggacagagaggagattatgatgaaagagaacaccat
gccttcccaatttatggtggccctaaaggcttccatgaagacagagagagatttcggcat
gtaaactataggtttgatagtagaagcggtcccaattggaacagaggatttgaacaagat
gctcacagagattttgatgaccgcagaagaccctgggaaagacagagggatagggatgac
agagattttaatttttgcagagaaattaatggaaacaggtttggaagagacagaatgtca
aacaactggatcccccctccacatccacgggtgtttgaatattttgatggggccacttcc
caacgcaaagctgataacatgccccaggtgaatggtgaaaatacagagacagaaagccag
ccaccaactgcacaggtgcaggatgatccagaactttatgaaaaactggcatcttccgtc
gagataaacaaagagaagagtgacacagaagctgatatagaaagtgaaccagtggtagaa
agcacagaaactgaggggacataa
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