Chaetura pelagica (chimney swift): 104388708
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Entry
104388708 CDS
T08631
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpea03009
]
104388708 (DDX55)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104388708 (DDX55)
Ribosome biogenesis [BR:
cpea03009
]
Eukaryotic type
Pre-60S particles
Helicases
104388708 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
AAA_22
SHOCT
DUF4050
Motif
Other DBs
NCBI-GeneID:
104388708
NCBI-ProteinID:
XP_009995909
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQVGAIIITPTRELAIQIEEVLS
HFTKHFPRFSQILLIGGRNPMEDVEKFKEQGGNIIVATPGRLEDLFRRKADGLDLAACVK
SLDVLVLDEADRLLDMGFEASLNTILDFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRI
SVKEKGVAASNTQKTPTRLENYYMICRADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYY
GKALESLIQQVKIMSIHGKMKRKRNKIFTAFRKLPGGILVCTDVMARGIDIPEVHWVLQY
DPPSSASAFVHRCGRTARIGRVGSALVFLLPMEESYINFLSINQKCPMQEMKPQPNVVDL
LPKLQSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKM
PELRGKCFPDFIPVTVNTDSISFKDKNREKQRQKQLEQLRKERQENGGKKNFTKNKAWSK
QKAKREKKKKVTAKRKREEGSDIEDEDMEELLNDTRLLKRLKKGKISEEEFEKRLTGSQS
KLKTETVADLEG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacaaggacgttgctgcagaagcagtaacaggcagtggcaaaaccttagcattt
gtcattcccatactggaaattcttctcagacgggaagaaaagttaaagaaaatgcaggtt
ggggctataattatcacaccaacaagggaattagccattcaaattgaggaggtgctgtcc
catttcacaaaacacttccccaggtttagtcagattcttttaatcggcggccggaatccc
atggaagatgttgaaaagttcaaggaacagggtgggaacatcatcgtagccacgccgggc
cgcctggaggacctgttcaggagaaaagcagatgggctggatctggcagcctgtgtgaaa
tcccttgatgtgctggtgttggatgaagcagacagacttctagacatgggctttgaagca
agtttaaacaccatcctggactttttgcccaagcagaggaggacagggctgttttcagca
actcagacccaggaggtggagaacctggtgagggcaggtctgaggaaccccgtccgcatc
tcggtgaaggagaagggagtggctgccagcaacacccagaagacaccaacacgcctggag
aactactacatgatctgcagagcagatgaaaaatttaatcagttggtgcattttcttcga
cagcacaaacaggaaaagcatcttgtctttttcagcacatgtgcctgtgtggaatattat
gggaaggctttggaatcgttaattcaacaagtgaaaatcatgagcattcatgggaaaatg
aaacgcaagcggaacaagatttttacggcttttcggaagctcccgggtggcattttagtt
tgcactgacgtgatggcccgtggcatagacattccagaagtgcactgggttttacagtat
gacccacccagcagtgcaagtgcctttgtgcaccggtgcgggcgcacagcgcggatcggc
cgggtgggcagcgcccttgtcttcctgcttcccatggaagaatcctacattaactttctc
tccatcaaccaaaagtgtcccatgcaggaaatgaaaccccagcccaacgtggtagatctc
ctcccaaagctgcagtccatggccctggctgacagggcagtgtttgaaaaagggatgaag
gcatttgtgtcctatgtccaggcttatgccaagcacgaatgtaacctgatcttcagaatt
aaagatctggactttgctagccttgccaaaggttttgcattgttaaaaatgccaaagatg
cctgaactaagaggaaaatgttttccagactttattccagtcactgttaatacagactcc
atttcatttaaggataaaaatagagaaaaacagagacaaaagcaattagaacagctaaga
aaagagagacaggaaaatggagggaagaagaatttcacaaagaacaaagcctggtcaaag
cagaaagccaagagggagaagaagaagaaagtaacagctaaaaggaagcgtgaagagggc
tctgatattgaagatgaagatatggaagagctgctgaatgacacaagactcttgaaaaga
ttaaaaaaaggaaaaattagtgaagaagagtttgagaagagattaacaggcagccagagt
aaactcaaaacagaaactgttgctgacttagaaggttga
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