Chaetura pelagica (chimney swift): 104388938
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Entry
104388938 CDS
T08631
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104388938 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104388938 (XAB2)
03041 Spliceosome [BR:
cpea03041
]
104388938 (XAB2)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104388938 (XAB2)
Spliceosome [BR:
cpea03041
]
Complex B
Other components
Prp19-related factors
104388938 (XAB2)
Complex C
104388938 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_19
TPR_12
TPR_8
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
104388938
NCBI-ProteinID:
XP_009996171
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search
LSPESAEEYVRYLVGAGRLDEAAQRLAVPCPQARDVYEEAVQTVVTVRDFTQVFDSYAQF
EESLIAARMETAAELGRGEDEEGQLELRLARFGALMSRRPLLLNSVLLRQNPHNVHEWHK
RVQLYQGRPEQIIQTYTEAVRTVDPQRATGRPHGLWVAFARFYEDNGQLDDARAILTRAT
RVRFRRVEDLAAIWCEFGEMELRHHNYSQALGVLRKATALPARRAEYFDASEPVQNRLYK
SLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYALFLEEHGYFEESFKELG
DDAARELCLRFADMEARLGEVDRARAIYTYCSQICDPRCPLCPQPSTCLSPVSPAIYLLY
AGLEERFGLARHAMGVYERATRGVPPEQRGDMFNIYIKRAAELYGVTHTRPIYQKAIEIT
GTFWQTWKDFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLA
PGQSGLDDMKLLEQRAEALAAEAQRDQPPSKGKVLFV
NT seq
1553 nt
NT seq
+upstream
nt +downstream
nt
ctgtcccctgagagcgccgaggagtacgtgcggtacctggtgggcgcggggcggctggac
gaggcggcgcagcgcctggctgtgccctgtccccaggcccgggatgtgtacgaggaggcg
gtgcagacggtggtgaccgtgcgggacttcacccaggtgttcgacagttacgcgcagttc
gaggagagtctgatcgcggcgcggatggagacggcggccgagctgggccggggggaggac
gaggaggggcagctggagctgcgcctggcgcgcttcggggcgctgatgtcgcggcggccg
ctgctgctgaacagcgtcctgctgcgccagaacccgcacaacgtgcacgagtggcacaag
cgggtgcagctctaccagggccgccccgagcagatcatccagacctacaccgaggccgtg
cgcaccgtggacccgcagcgcgcgacgggacgtccccacgggctctgggtggccttcgcg
cgcttctacgaggacaacgggcagctggacgatgcccgtgccatcctgacccgtgccacg
cgggttcggttccggcgggtggaggacctggctgccatctggtgtgagtttggggagatg
gagctgaggcaccacaactacagccaggccctgggcgtgctgaggaaagccacggcactc
cctgcccgtcgggccgagtacttcgacgcttcggagcctgtgcagaaccggctctacaag
agcctcaaggtctggtccatgttggccgacctggaggagagtttgggcaccttccagtcc
accaaggctgtgtatgaccgcatcctggacctgcgcatcgccaccccccagatcgtcatc
aactacgcgctgttcctggaggagcacgggtacttcgaggagagcttcaaggaactgggt
gacgatgccgcccgggagctgtgcctgcgcttcgcggacatggaggcgcggctgggggag
gtggatcgagcccgagccatttacacctactgctcccagatctgcgacccccgctgtccc
ctgtgtccccagccatctacctgcttgtcccctgtgtccccagccatctacctgctgtac
gcggggctcgaggagcgcttcggcctggcccgtcacgccatgggggtttacgaacgggcc
acccggggggtcccccccgagcagcgaggggacatgttcaacatctacatcaaacgcgcc
gccgagctctacggggtcacgcacacccggcccatctaccagaaggccatcgagatcact
ggcaccttctggcagacctggaaggactttgagatccgccacgggaacgaggacacgatc
cgggagatgctgcggatcaagcgcagcgtccaggccacctacaacacccaggtcaacttc
atggcctcccagatgctcaaggtctacagcaacgccacaggcactgtctcagacctggca
ccagggcagagtggcctggatgacatgaagctgctggagcagcgcgcggaggcgctggcg
gccgaggcccagcgggaccagccccccagcaagggcaaggtgctcttcgtcag
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