Chaetura pelagica (chimney swift): 104389686
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Entry
104389686 CDS
T08631
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
cpea
Chaetura pelagica (chimney swift)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
NDNF
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
104389686
NCBI-ProteinID:
XP_009997024
LinkDB
All DBs
Position
Unknown
AA seq
1470 aa
AA seq
DB search
MLIHTCFFFACLPVMSYVWGRVGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEELRNASQSR
NNRRNSGTGPGKNLTSAGSLGAEHSGVAEATPPPFNTVLMQPAKDRAEKKRQKGTQPKGS
GETTRNQPSVEASVTEVTPTTPKSSQRASVEWETPGKEKPTKDSLRRGSQFQCDTSAMID
IVLLVDGSWSIGRNNFKLIKDFLSNLISPFSIAQDKIRVGLSQYSSDPRTEWDLSAYSTR
DQVLEALRSLRYKGGNTFTGLALTHVLEQNLKPAAGARLEAEKLVILLTDGKSQDDANLA
AQTLKNLGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTQVLCTRI
QEKSNKEIAGSTLKDIPENTGLQMSPTDLKISAVTSKSMHLTWSPPLKPPKKYRIVYYPS
KGGSTKEVVLDGAISSLQLSNLTSHTEYLVLVFPIYDTVVGDGLRGVTSTLPLSSPRSLR
VSELTHNSIRLSWEAAQGATQYLVLCSAAPDGEEDYTTEVKVAQPEVLLDGLSPSTEYSV
AVYAMYGEDASDPASIQETTLALSPPRYLSFSELSHASVRVSWEAASPAARAHRLTYVAG
RGGNAGEVEVPGTATSTVLRPLSSLTQYFISVRSTYEEGDSFPITGNVTTLKVPPPRALK
VTELSGNSLRLQWEAVAASDVVVYQIKWSTVSGEKPQELSLAGNVATAVLPGLQKNTDYK
ISIWAYYKDGARSDTVSVQHRTNSWNPPTNLFIDSETPTSLQVHWTPPEGRVQHYKIIYS
PVADAAAQHTIMASGKSSSVTLHSLLPDRAYKVAVSAIHYTGESESTSTTGQTAPTLSKF
PSIRGFIPSKTEACPTISSAEGSRQGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRTFT
LFRDIQLTLRTSDVHLFAIPPEHTISVLLRLLPDTPREPFAVWQVTDEDFQPLLGVNLDP
SKKTLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKIKLYVDCKKIAEKPI
NTVGSISTAGFIMLGKVTRTRGPRSGSAAFQLQGLQILCSSIGAEGDRCCDLPALRNEET
CPAIAPACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSGQQ
GSPGSQGITVQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGTAG
PPGPPGPRGFQGVTGSRGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQA
CERMIQTHVLKFDSFIHEHARKPVPVWEERLKPGEPGPPGPPGPPGSNGERGQNGFPGQP
GKDGYPGERGAPGPKGEKGMPGASEEGIQGPKGRTGPPGEVVLGKPGPKGYPGNAGPPGF
PGVRGQPGQPGYPGGCDISGCYGADRRGMS
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgctcattcacacttgtttcttctttgcctgcctgcctgtgatgagttatgtctgggga
cgagtgggccaagggtcgggccggctgaagctcactgtcctctcagaagacaggctgcag
atgaagtggaaggagactgaagggaacatcaatggctacaaggttcgggtgaagcccatg
gcaggggactcagagcaagaagtcatgctgaaaaccaagactcccaaagccacagtggga
gggctgagccctaccaaggaatacacactgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaagaggaaatttgtgatagaggagctcagaaatgcatcccagagtaga
aataaccgaagaaactcaggaactgggccaggaaagaatctcacttctgcagggagctta
ggagctgagcacagtggggtggcagaggccaccccaccacctttcaacaccgtcttgatg
cagccagcaaaggacagagctgaaaagaaaaggcagaaggggactcagccaaagggctca
ggagaaaccacaagaaaccagcccagtgtggaggccagcgtgacagaagtgacaccaacc
actcccaaatcatcccagcgtgcttctgtggagtgggagactccagggaaagaaaaaccc
accaaggattccttgaggcgaggttcccagtttcagtgtgacacatctgccatgattgac
attgttctgcttgtggatggatcctggagcatcggacgcaacaatttcaagctcattaag
gactttctgagcaatttgatttccccattcagcattgcccaagacaagataagagtcgga
ctgtcccagtacagcagcgacccccgcaccgagtgggatctgagcgcttattccacaaga
gaccaggtgctggaggccctgaggagcctgcggtacaagggtggcaacacctttacaggt
ctggcgctgacccacgtcctggagcagaatctgaaaccagctgctggtgcccgactggag
gctgagaagttggtaatcctcctgactgatggaaaatcccaggatgatgccaacctagct
gcccagaccttgaaaaacctgggcatagagatatttgccattggggtgaagaacgcggac
gaggcagagctgaagcaggtggcctcggagccgctggagctcacggtctacaacgtgctg
gatttcccactgctgagctctctggttggcaggctcacccaggtcctctgcaccaggatc
caagagaagagcaacaaggaaattgcaggcagcactttgaaagatatccctgagaacacg
ggtctccagatgagcccaactgacctgaaaatatcagctgtgacctccaagagcatgcac
ctgacctggagtcctcctctgaaaccaccaaagaaatatcggatagtgtattatccatct
aagggtggcagcaccaaagaggtggtcttagatggagccatctcctctttgcagctttct
aacctgacctcgcacactgagtacctggtgttggtgtttcctatttatgacacagttgtt
ggggacgggctgagaggcgtcacctccacattgcctttgtcttctcctcgttccctgcgt
gtctctgagctgacccacaacagcatcaggctgagctgggaggcagcccagggagccaca
cagtacctggtgctctgctctgcagctcctgatggagaagaggactatactacagaggtg
aaggtggcccagcctgaggtcctgctggatgggctgtcccccagcacagagtactctgtg
gcagtgtatgctatgtatggggaagatgcaagtgacccagccagcatccaagaaaccacc
ttggccttgagtccccccaggtacctgagcttctcggagctgagccacgcgtcggtgcgt
gtcagctgggaggctgcgtctccggccgccagagcccatcgcctcacctacgtggctggc
agagggggcaacgctggggaggtggaggttcctggcactgcaacatccactgtcctgaga
cctttgtcctccctcacccaatacttcatcagcgtccgatctacatatgaggaaggggac
tcctttccaattactggcaacgttaccaccctgaaggtccccccacctcgtgcactgaag
gtgaccgagctctctgggaacagcctccgactgcagtgggaagctgttgctgcctctgat
gtggttgtctaccagatcaaatggagcacagtcagtggagagaagcctcaggagctctcc
ctcgctggaaacgtggcaactgctgtcctgccaggcttgcagaagaacactgactataaa
atatccatctgggcctattacaaagatggtgctcgaagtgacacggtttctgtccagcac
aggaccaattcctggaacccacccaccaacctcttcattgactctgagacccccaccagc
ctccaggtccactggacccccccagagggccgcgtgcagcactacaagatcatctacagc
cccgttgctgatgctgctgctcagcacacaatcatggcttctggcaaaagcagcagtgtg
accctgcactcactgctccctgaccgagcctacaaggtggcagtttctgccatccactac
acaggagagagtgagagcacatccaccactggccagacagctcctacgttgtctaaattc
ccttcaatacgaggattcattccatctaaaacagaggcctgccccaccatcagctctgct
gaaggctcccgacaaggatttgatatgatggaagcttttggcctagtagaaaaggagtat
gcctccatcaaaggggtggctatggagccattcgtgttcagcggctcccgaaccttcacc
ctgttcagagacattcagctcaccctgaggaccagtgatgtccacctctttgccatcccc
cctgagcacaccatcagcgtcctcctgcgcctcctgcccgacacccccagggagcccttt
gctgtgtggcaagtaacagacgaggacttccagcccctgcttggtgttaaccttgacccc
agtaagaaaaccttgacctatttcaatcatgactacaaggctgacttacaagaagtctcc
tttgaccagcaggaagtgaagaagattttctatgggagttttcataaggtgcacgtggcc
gtgagccacttcaagatcaaactctatgtggactgcaagaagatagcagagaaacccatc
aacacggtgggcagcatctccactgctggcttcatcatgctgggaaaggtgacaaggacc
cggggaccaaggagcgggtctgcagcgttccagctgcagggtttgcagatcctgtgcagt
agcattggggcagagggagacagatgctgtgacctccctgctttgaggaatgaggagacc
tgtcctgccattgctcctgcctgctcttgtacttctggccgcccgggcttgccaggacct
ccaggaccccctggcagcccggggaggagaggacctcaaggagagcagggggagccagga
cccaagggtgaaccaggcccaccaggacaagtagggccagagggtcctagtggtcaacaa
ggctctccaggttcccaaggaatcactgttcagggtcctgtgggaccaccaggaattaaa
ggggagaaaggagacactggaagtcctggcatgcagggcattcctggtgtgcaaggagct
ccaggcagggatggtcttcaaggtgcaaagggggtgaggggactagaaggcacggctggg
cctccaggacctcctggaccaaggggtttccaaggagtgacaggctcccggggcagcagc
ggagagaagggacctccaggtgatgttgggccaacagggctgccaggtccaaaaggagaa
agaggagagaagggggaaccacagtccttggccacaatttaccaactggttagccaggct
tgtgagcggatgattcagacccacgtgttgaaatttgactccttcatccatgaacatgca
aggaagccagttcctgtttgggaagagagattaaaaccaggagaaccaggaccaccaggt
cctcctggtcccccggggagcaatggagaaagaggacaaaatggcttccctggtcagcca
ggcaaagatgggtatcctggggaaagaggtgccccagggcccaaaggagaaaaagggatg
cctggagccagtgaggaagggatccaaggacccaaaggcagaacaggaccaccaggagaa
gttgtgctggggaaaccaggtccaaagggctaccctgggaatgctggtcctccaggtttt
cctggtgtcagagggcagcctgggcagcctggatatccagggggctgtgatatctccgga
tgttatggggcagataggagaggtatgtcctga
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integrated database retrieval system
