Chaetura pelagica (chimney swift): 104389764
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Entry
104389764 CDS
T08631
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpea03041
]
104389764 (YTHDC2)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104389764 (YTHDC2)
Spliceosome [BR:
cpea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104389764 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
Ank
Ank_4
ATPase
AAA_22
PhoH
AAA_23
AAA_7
AAA_16
SRP54
AAA_29
AAA_30
T2SSE
ResIII
Motif
Other DBs
NCBI-GeneID:
104389764
NCBI-ProteinID:
XP_009997103
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLISKSKGKGANRYLTVRKKDGSELTHAVMTCCLAPST
KHAIRSLIQRFPVTSKERTELLPKTERGNARAVESENREVSKTSGRLNNGIPQVPVKRGE
SEFDCFRQSLPVFEKQEEIIQIIKDHKVVLIVGETGSGKTTQIPQFLLDDCYKNGTPCRI
FCTQPRRLAAVAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGILLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQANLKLIISSAALDANLFIRYFGSC
PVIHIQGRPFEVKEFFLEDILRSTGYSNKEMVKYRKEKQREEKQQSTLTEWCSAQESSSK
LESQRQRSVPSAPEDYNLLDDGGDTVFNQLTEKDSNCLEPWLIKEMDSCLSDIWLHKDVE
SFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCKSSNGWMA
LDWAKRFGQTEVVELLESYSTSVEFGSLDENSLVQTSGSDLSAEDRELLKAYHHSFDSEK
VDLDLIMHLLYNICHSYDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHS
NMQTLDQKKVLKSPPFGVRKIILSTNIAETSVTINDVVYVIDSGKMKEKSFDALCCVTML
KMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQTPELLRMPLQDLCLHTKLL
APLNCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLTELPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTLASQKRAAMLCRKRFTAGTSSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALLTDWLIYDEMTRAHRIANIRCCTVVTPVTVSLFCGPARLPSNALQEPSSFGGY
GLSNDNSDSEMEDTTAANLALLKLDDWLHLKLDPEV
NT seq
3169 nt
NT seq
+upstream
nt +downstream
nt
atggagtttccttcttctttcactagtactgagcgagcgtttgttcaccggctctgtcag
tctctgggactgatatctaaaagcaaaggaaaaggggcaaatcgatacctgactgtaagg
aagaaagatggatcagaactgacacatgcagttatgacttgttgcttggctcccagcacg
aaacatgctatccggagtttgattcagagattccctgtcaccagtaaagaacgaacagaa
cttctgccaaagacagagcgaggaaatgctcgtgctgttgaatctgaaaaccgggaagtg
agcaagacaagtgggcgacttaacaatggtatcccccaggttccggtgaaaagaggggag
tcggagtttgattgcttcaggcagtcactaccagtttttgaaaaacaggaagaaattatc
caaataataaaggaccataaagttgttttaatcgtaggagagactggatcaggcaaaact
acccagattccacagttcctccttgatgactgctacaaaaatggaacgccctgtcgtata
ttctgcactcagccgagacgtttggcagctgttgctgtggctgaaagagtggcagcagaa
aggagagaaaagattggtcagacagttggctatcaaatccgactagaaagcagggtttct
ccaaagacgctgttgacgttttgcactaatggcatcctacttcgcacgctaatggcagga
gacagcaccctatcaactgtgacacatgttatagtggatgaagtacatgagagggacagg
ttcagtgacttcctgttaataaaactgagagatgtgttgcaaaaacaggctaatttaaaa
ttaattatttctagtgctgctctagatgcaaatctctttattaggtattttggaagttgc
ccagtaatacacatacaaggaagaccttttgaagttaaagagttttttctggaggacatt
ttacgaagcactgggtattcaaacaaagagatggtaaagtacagaaaagaaaagcagcga
gaagaaaaacagcaaagcactcttactgaatggtgttctgctcaagaaagtagtagcaaa
ctggaatctcagaggcaaagatctgtcccaagtgcacctgaagactataacctgttggat
gatggtggtgacacagtatttaatcaactgactgaaaaagattcaaattgccttgagcca
tggctaataaaagaaatggattcttgtctttctgacatctggttgcataaagatgttgaa
tcgtttgctcaagtgttccatctcattttaactgaaaatgttagtgttgattataggcac
agtgaaaccagcgcgactgcactcatgattgcttcagggagaggctttctgagccaagta
gagcaactgatcagtatgggagcaaatatccactgcaagtcatccaatggctggatggct
ttggactgggctaagcgctttggacagacagaggttgttgagctcttggagtcctacagt
acttcagtggagtttggaagtctggatgaaaattctctagtccaaacaagtggtagtgac
cttagtgcagaagacagagaactgttgaaagcttatcatcacagttttgatagtgaaaaa
gtggatctggacctgattatgcatttactttataacatctgtcacagttatgatgctgga
gcaattttgatcttccttcctggctatgatgagatagttagcctgagggaccggatcctg
tttgacgacaagagatttgctgataatgcacacagataccaagtttttatgcttcattca
aacatgcagactttggatcagaagaaggtgcttaaaagcccaccttttggcgtccgcaaa
ataattctttctacaaatattgcagaaaccagcgtaacaatcaatgatgttgtgtatgtt
attgactcaggcaaaatgaaggagaagtcttttgatgcactgtgttgtgttacaatgcta
aaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagagctggacgctgt
cagcctggagtgtgtttccgtctcttcagcaggctgcgatttcagaatatgttggaattt
cagactcctgaacttctcagaatgcctcttcaggatctttgtttacacacaaaacttctg
gctccacttaactgtccaattgttgactttcttatgaaagctcctgatcctccaccagct
ttaattgtgagaaatgctgtgcagatgcttaagacaatagatgccatggacccttgggaa
gatctcactgaacttggttatcatctcactgaattaccagtagagccacaccttggtaaa
atggtgttgtgtgctgttgttttgaagtgcctggatcctattcttactattgcttgcact
cttgcatatagagacccttttgtccttcctacactggcctctcaaaagcgtgcagccatg
ctgtgcagaaaacgttttactgcaggaacatctagtgaccatatggcacttctcagggct
ttccaggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgagaagaac
tttctgtctcaagccacgatggaaataatcgtaggaatgagaacacagttgcttggtcag
cttagagcctcaggttttgttagagccaggggaggagccgatattagagatgttaatact
aactctgaaaactgggctgtagtgaaagctgccttagtggctggtatgtaccccaacctg
gtgcatgtagacagagagaatttggtcttgactggaccaaaggagaagaaagtgcgattt
catcctacctctgtgcttagtcaacctcagtataaaaagattccaccggcaaatgggcaa
gctgcagcaattcaggccctcctcacagactggcttatatatgatgaaatgacgagagct
cacaggatagcaaatatcagatgctgtactgtagtaacacctgtgactgtgtcactcttc
tgtggaccagcaagattaccaagtaatgctttgcaggagccttcatcctttggagggtat
gggttatctaatgataacagtgatagtgagatggaggacaccacagctgctaatttggcc
ctactgaagttggatgactggctccatctcaaactggaccctgaagtaa
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