Chaetura pelagica (chimney swift): 104389829 Help Entry 104389829         CDS       T08631                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism cpea  Chaetura pelagica (chimney swift) Brite KEGG Orthology (KO) [BR:cpea00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cpea03021]     104389829 (SETX) Enzymes [BR:cpea01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104389829 (SETX)     5.6.2.5  RNA 5'-3' helicase      104389829 (SETX) Transcription machinery [BR:cpea03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      104389829 (SETX) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 AAA_30 Viral_helicase1 AAA_22 SAS4 AAA_16 UvrD-helicase Motif Other DBs NCBI-GeneID:  104389829 NCBI-ProteinID:  XP_009997180 LinkDB All DBs Position Unknown AA seq 2586 aa AA seqDB search MSTCRWCTPGGSDTTEFLKSYAFKELSLEDLEGANDDLCYCLECVVEYHKAREELPKLHE VLWELETSRLVAHIEKSIQEEAGDDDELIIVNEGEERQLSGYVGPDFENNLRVPLLEILK YPYLLLHEKVSELCVEVLCKMEKNQSSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSVIEKGKLILLPSHLYDTTNYKNYWL GICMLLTVLEEQAMDSLLLDPDKQNDFMQSILHTMEKEAVDDSTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRNSFKRTKSEPESDYNDDMVTCSQIVYD FNTEKLQKDTGWKAAICPDYLPSMYEDMQTLAHMLQSDIGRDMRIHNSTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLYSEIKDILNERIQQCDKISEFFVLILVSIIELHRNKKCLHLL WISSQEWVEVVVRCAKLPAIAFTRCTEKGSGHCVRGSSGMSLQASNSVQHACVQLIRSLL KEGCQMGQQTLCKQYLNKLNLFLRGNLSLGWQLNVQETQELQMCLKQVIRNIKDRALNTS APIENSASSTTLPTISVKQEKSGRGDGCGRDGLCSPAALISKEGRDEDCPENPFTRRKSA WEEECRDASKSSISWTSTEGLLVNIKKEPNDLTTPECVCPWNSLATKECGKVEENRSSDL VVGKCTMDDQCVNPNTQRSDFRRIRELENKGEAGPIAPVHLAAQTGSPEDGYSSDGKASN TFSSTSSKLKVDAQRLMNLKDMLQKTEWPSKVLQPTKPSDLKSCSLTTSASKAEVEKPKL CTGYLCATKDCHKHQGVNIVYENEISVDSPSWRSCEGAQKKSINSAFQSRLVPTNQVSKE TPLVCSSSSKSKPGVQEDEDNSILLSGISDTVVKKESTEEKSGLLLRSVFMKDPEMQTSD QEQANLNGSGKYDCKGQIPKTFSVDKTSANDCVPSTSENKRDTSNPASHIRLLSVKSESN DRLFQFSEYFKRENNLVGKKEENCVKTVSEDNTLSDSQIDRDLSKLSLAAYAKSVNFPFD SSQESSVHHNLCDIKRKVKGAVRSSVDDQSAQPPCDADCHDNEVIIILDSSDEENNMADK EKTTKNNENACPEKQPSTSSCISDSKSPNSPLLLQDCDSQYFEFETEDEVFSVWQDTQDY TMAATQEYKQDQVSASVNNGNSNGSLEDHTNEWGYDLDYLSDETMEEEAKLVEKQIDNNS HPEEADNAKEVTNSALQESSSKGDAKEQLENLADKGPVAKDSTLGSKLTEPRASTSKMSL ASKLALKKNSLSPRKSIAKSKVARAIQRSPKKPPFLKPAQNKKLLQSTSKNSQSGGSLPA VIPPRKVRQCPAPSTTAEKLGLKKAPRKAFELSQRSLESLAELRSHGRAAGRVALAQKRK SKLIAPQNLSVKYNKKLLACQDRLYFGQTRPKKGVKHPVGSSESRNKTVRKVDANSRKQT PTSFELGSVENPRDKKREETNVSKMLTSSDLNRRSEGNSMMVPPVPLGSSLSSATLAQDG QAEPSGEGCSVQPGCEKTASKENGCKPNENSEDDDDDHLFLTQSDPKDEESRSLEEGVED ATKTSKKPEETNSAESLQQKDSLTTVKCKYKNCMEKVEKPREYCSNHSATSSEADHLFAK PLLPPSKPRKPSTTKIFSSASSSRNAAFSKDFEDVKKPPPASRNKENAAKPPHARAAPPG NQTWKPLSSSNVPQLPSSNVLQPQNRQNYNVSNIVRRPAQDVCPAFFEPNPRDHSTFVNE VLKWTYEMFANSSECGPPSGLLQSVVASVPVQFWGEKHYFETFFPLMMLNAFETLAKEWA ENQKVRERSYCFCLENLSSDLNAGNLTASFTANFTAHFKESDLAKQLHPKEDDLIFLMVQ KKKDAFGEESEMETQIVNHVGLVKRFARASGCATGQREQHTVCHLSVQTRGNLSFFINKQ VKCVVIGSLVTTRRTFRGLMLLHKSCLARPIINPSYDYFCPRGLPTASESAALVMNEYNE DQRRAIETAYAMVKEHPELPKICLIHGPPGTGKSKTIVGLLSCILRENMRNDKASPKINS KIKPNRFLVCAPSNAAVDELMKKIIVSFKEKCQNRQEPLGNCGDINLVRLGSEKTINSEV RGFSLDKQVEHRMKRKPTDGDQDMQKRKAALDQQLDMLARQRAMHRCEKRESQMLDDEIG RISRERQQLASQLKEVRGHAQKVQADIILEADIICCTLSTSGGGLLESAFWRRGGQGFSP FCCVIVDEAGQSCEVETLIPLMHRCSKLVLVGDPRQLPPTVKSLKAQEYGYDQSLMARLH RHLEEQVRNNVFRSLPVVQLTVQYRMHPDICLFPSNYVYGRTLKTDKATEENRCSSEWPF QPYLIFDVGDGREERDRDSFSNPQEVKLVMELIRTIKEKRKDLGLRRIGIITPYSAQKKK IQEQMDKVFKNNSPGEVDTVDAFQGREKDCIIVTCVRANSTRGSIGFLASLQRLNVTITR ARFSLFILGRLKTLMEVKSFCLYRCALCFALAAASSVGIFFLLQWQHKLQIKAYEVSLVL MSPCEE NT seq 7761 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgtcgatggtgtacaccgggtggttctgacaccacggagttcctgaagagc tatgcttttaaagagttgtccctggaagatcttgaaggagccaatgatgatctctgttac tgcctggagtgtgtggtcgaataccacaaagcacgggaagaactgccaaagttgcatgag gtcttgtgggagttggaaacctcccgtcttgttgcccacatagagaaatccatccaagag gaagctggagatgatgatgagttgattatagtgaatgagggtgaagagagacagctgtct ggttatgtgggcccggattttgagaataacctgcgagtgcccctcctagaaatactgaaa tatccatatctgctgctgcacgagaaagtcagtgagctgtgtgtagaagtgctgtgtaaa atggaaaaaaatcagagttcctttcaggtctttgagaaatatccaggaatttatctcttt ttggtacacccaaatgaagtgattcgtcgatgggccatcctaacagcaaggaatttaggg aaggttgacagggatgattattatgacttgcaggaagtgctgacttgcttgttcaaagtt attgagttggggctttttgagagtccagatatttacagctcttcagtgattgaaaagggt aaactcatccttctaccatcccatttatacgatactacaaactacaagaactattggcta gggatttgtatgttgctaacagtgctggaagagcaagccatggactccttgttactggac ccagacaaacaaaatgatttcatgcagtccatacttcacaccatggagaaggaagcagtt gatgattccactgaccccttctggccagcgctgcattgtttcatggttattttggatcag ctcggatctaaagtgtggggtcagcttattgatcctgtccaggcctttcaaaccattatc aacagtgtgagctacaacaatgaaataaaaaatatacgcaatagctttaagaggacaaaa tctgaaccagagtcagactacaatgatgacatggttacttgcagtcagattgtgtatgat tttaacacagaaaagcttcagaaggatactggatggaaagctgctatttgcccagactac ctccccagcatgtatgaggacatgcaaacactggctcatatgctgcagtctgacattggc agagacatgcgcattcataacagcacgtttctgtggttcatcccttttgttcagtctctt atggatctcaaggacttgggtgtagcatatatagtagaggtcattcactacctttactca gaaatcaaagacattctcaatgaaaggatccagcagtgtgataagatctcggaatttttt gtcttaatcttggtgtcgattattgagctgcacaggaataagaagtgcctgcacttgcta tggattagctcccaggaatgggtggaagtggtggtgaggtgtgccaagcttccagctata gcatttacacggtgcactgaaaaaggctctggacactgtgtgaggggttcatcaggaatg tctttacaagcttctaactccgtgcagcacgcgtgtgtgcagctgatccgcagccttctg aaagaaggttgtcagatggggcagcaaactctttgcaagcaatacctgaacaaactcaat ctttttctgcgaggaaatttatctttaggttggcagttgaacgtccaggaaacccaagaa ttacagatgtgtttaaagcaagtaataagaaatataaaggacagagcattgaacacctct gcgccaatagaaaacagtgcaagctctacaactttgcccaccatttcagtcaagcaggag aagagtggacgtggtgatggatgtggcagagatggcctttgttcaccagctgctctcata tcaaaggaaggcagagatgaagattgtccagagaaccctttcactagaagaaagagtgcc tgggaagaggaatgtagagatgcatctaaaagttcaatatcttggacatccacagaaggc ctcttggtgaatattaaaaaggaacctaatgacctgacaactccggaatgtgtctgccca tggaactctttggcaacaaaggaatgtgggaaagttgaggaaaacaggagcagtgatctc gtggtggggaagtgcactatggatgatcagtgcgtaaatccaaatacccaacgttcagat ttcagaagaatcagagagctggaaaacaaaggtgaagcaggacccatagcaccagtgcac ctggctgctcaaactggttctccagaagatggttacagctcagatggaaaggcaagcaac acgttttctagtacctcttcaaagttgaaagtggatgcacagagactgatgaatttgaag gacatgctgcagaaaactgaatggccctcaaaagtactgcagcctaccaagccaagtgac ttgaaaagctgcagtttaacaacaagtgcttcaaaagcagaggtggagaaacctaaactt tgcactggctatctctgtgctaccaaagattgtcataaacatcagggagtgaatattgtg tatgaaaatgaaatctctgttgattctccatcttggaggagttgtgaaggtgcacagaag aaaagtatcaacagtgcttttcaatccagactggtccccactaaccaagtgtccaaagaa acaccactcgtttgctctagctcctctaaaagtaaacctggtgtgcaggaagatgaagac aacagtattttgctttcagggattagtgacactgtagtgaaaaaagaatctactgaagaa aagtcaggtttactgttgaggtctgtctttatgaaagaccctgagatgcaaacttcagac caggaacaggctaatttaaatggctcaggtaaatatgactgtaaaggtcaaattccaaag acattcagtgtggataaaacttcagcaaatgattgtgttccatctacctctgaaaacaag agggacacatctaaccctgcttcccatatcaggctactgtctgtgaagagtgaatcaaat gacaggttgttccaattctcagaatatttcaagagagaaaacaatttagtggggaagaaa gaggagaattgtgtgaaaactgtttctgaagataatactttatcagactcccagattgac agagacctcagtaaattatctctagctgcatatgccaaaagtgtcaattttccttttgat tcaagccaagaaagctcagtccatcataacctatgtgatattaaaagaaaagtgaaaggt gctgtaagatcttccgttgatgaccaaagtgctcagcctccctgtgatgcagattgccat gacaatgaagtaattataattttggactcttctgatgaagaaaacaacatggctgacaag gagaaaacaacaaaaaataatgagaatgcgtgtcctgaaaagcagccttcaacttcaagc tgcatttctgactcaaagtcaccaaactctcctttgttactgcaagactgtgattctcag tactttgaatttgaaacagaagatgaggtcttttcagtgtggcaagatactcaagactat actatggcagcaactcaagagtataaacaggatcaagtttcagcatcagttaataatggt aattccaatggctcactggaagatcacacaaatgagtggggttatgatctggattaccta agtgatgaaactatggaagaagaagcaaagttggtagaaaagcagatagacaataattct catcccgaagaagctgataatgcaaaggaagtaactaattcagcattgcaagagtctagt agtaagggagatgcaaaagaacaactggagaatttggcagacaaaggtcctgttgctaaa gactccaccttgggctcaaaactgactgaacccagagcatctacatctaaaatgtcatta gcttccaagctggccctgaagaagaacagtctgagcccacggaagagtatagcaaaatcc aaggtagcaagagctattcagagaagccctaaaaagcctccttttcttaaaccagcccaa aataaaaagctacttcaaagtacctcaaaaaattcacaatctggcgggtcattgcctgct gttattcctccaaggaaggtcaggcagtgtcctgcaccctccaccactgcagaaaagctg ggtttgaagaaggcacctcgtaaagcctttgaattatcccaacgttccttggagagcctg gctgagctgcgcagccacgggagagctgcagggagggtggcacttgcacagaaacggaag agtaaactaattgctcctcagaatttgtctgtaaaatacaataaaaaactgctagcctgc caagaccgtctgtattttgggcagacgaggcccaaaaaaggtgtgaaacatcctgtggga agttctgagagtagaaacaaaacagttaggaaagtggatgcaaattctaggaaacaaaca cctacaagttttgagcttggatctgtagaaaacccaagagacaaaaaaagagaagagaca aatgtctctaaaatgcttacttcttcagacttgaacagaagatcagagggtaacagtatg atggttcctcctgtacctctgggttcaagtctctcttctgctactcttgctcaagatggt caagctgaaccttcaggagaaggttgcagtgtccagcctgggtgtgagaagacagcttca aaagaaaatgggtgtaaaccaaatgaaaacagtgaagatgatgatgatgatcatctgttt ttaactcagtcagatcctaaggatgaggaatcacgttctctggaggaaggtgttgaagat gctactaaaactagtaaaaaaccagaggaaacaaatagtgctgaaagtcttcagcagaaa gactccttgactactgtgaaatgtaagtacaaaaactgcatggagaaggtagaaaaacca agagaatattgcagtaaccattcagccaccagctcagaagcagaccacttgtttgccaaa cctctcctgccaccttctaaaccaagaaagccttccacaaccaaaattttcagctcggca agttcctcacggaatgcagccttcagcaaagactttgaagatgttaagaagcccccgcca gcttcaagaaacaaagagaatgcagcaaaaccaccacatgcaagggctgcacccccagga aatcagacttggaagcctctaagttccagtaatgtacctcagctccctagctctaatgtt ctccagccgcagaacagacagaattacaatgtttcaaacattgtcagaagacctgcccaa gacgtgtgtcctgccttctttgaacctaacccccgggaccatagtacttttgttaatgaa gtcctaaaatggacttacgaaatgtttgcaaactccagcgagtgtggacctcccagtggt ctcctgcagtctgtagtagcctctgttcctgtccaattttggggagagaaacattatttt gagacttttttccccttgatgatgctaaatgcctttgaaacactggcaaaagagtgggca gaaaaccagaaagtaagagagaggagttactgcttctgcttagagaacttatcttctgac ttgaatgcagggaatcttacagcaagttttacagcaaattttacagctcattttaaagaa agtgatttggcaaaacagcttcatccaaaggaggatgacttaatctttttgatggtccaa aagaaaaaagatgcctttggggaagaaagtgagatggagacccagatagtgaaccatgtt ggtctcgtgaaacgatttgctcgtgcatctggctgtgcaactggacaaagggagcagcac actgtctgtcatctttctgtgcaaactcgaggcaatttgtcattcttcataaataagcaa gtgaagtgtgtagtgattggctccttggtgaccacgcgccgaacattcagaggtctaatg ctattacacaagagttgcctggctagacccatcatcaatccaagttatgattacttctgt cccaggggcttgcccacagcttcagaaagtgctgcgttagttatgaatgaatacaatgaa gatcaaaggagagccattgagacagcttatgccatggtaaaggaacatccagagcttccc aagatctgcctcatccatggtccacctggaacagggaaatcaaaaactattgttggactt ctgtcctgtattttaagagaaaacatgaggaatgataaagcatctccaaaaataaattcc aagatcaagccaaaccgttttctagtttgtgccccatcaaatgctgcagttgatgaactc atgaaaaagatcatcgtttcatttaaggaaaagtgccagaacagacaggagcccttggga aattgtggtgatatcaatttagtgcgacttggttctgaaaaaaccatcaacagtgaagtc cggggatttagcctggataagcaagttgaacatagaatgaaacgaaagccaactgatggt gaccaggatatgcagaagagaaaagcagccctggatcaacagctggacatgctggctcgt caacgtgccatgcacagatgtgagaagagggagagtcaaatgttagatgatgaaataggc agaatttcaagggagagacaacaacttgcttctcaactaaaggaggtccggggccatgct cagaaggtacaggcagatatcatcctggaggctgacatcatctgctgcaccctgagcacg agtggaggggggctgttggaatctgctttttggcggcgaggggggcaaggattcagtccc ttctgctgtgtcattgtggatgaggcaggacagtcctgtgaagtggaaacgctgattcca ctgatgcatcgctgtagtaaacttgtccttgttggagatcccagacagctccctcctact gtaaaatcactaaaagctcaggagtatggctatgaccagtccttgatggcccgtctgcac aggcacctagaggagcaagttcgcaacaacgttttccggagcctgccggttgtgcagctg actgtgcagtacaggatgcaccctgacatctgcctcttcccttccaactatgtttatggc aggactctaaagactgacaaagcaacggaagagaacagatgttcttcagagtggccattc cagccctaccttatttttgatgtaggagatggtcgtgaggagcgagaccgtgactctttt agtaatcctcaggaagtgaagctggtgatggaattaatcagaacaattaaggaaaaaagg aaagacctgggtctgcgtcgcattggaataattaccccttacagtgcacagaagaagaaa attcaagaacaaatggacaaagtgtttaagaataacagcccaggagaagtggacacagtg gatgcattccagggtcgagagaaagactgcatcatcgtgacatgtgtccgggcaaacagc actagagggtcaattgggtttctggcaagtcttcagcgtctgaatgttacaatcacccga gccaggttcagcctcttcatccttggaagactgaaaacactcatggaagttaagagcttt tgtttgtacagatgtgccttgtgttttgctcttgctgctgcttcatcagttggaatcttt ttcttgttgcagtggcaacacaaactgcagattaaagcctatgaggtctctttggtccta atgagtccatgtgaggagtga

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