Chaetura pelagica (chimney swift): 104390296
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Entry
104390296 CDS
T08631
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cpea03037
]
104390296 (IFT88)
Cilium and associated proteins [BR:
cpea03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
104390296 (IFT88)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_7
TPR_8
TPR_14
TPR_19
TPR_16
TPR_6
ANAPC3
TPR_11
TPR_10
TPR_17
TPR_9
ARM_TT21_4th
ARM_TT21_5th
TPR_15
TPR_CcmH_CycH
HEAT_Nup120
DUF2989
TPR_21
ARM_TT21_C
HAT_PRP39_C
DUF6584
ARM_TT21_2nd
GnHR_trans
Coatomer_E
Motif
Other DBs
NCBI-GeneID:
104390296
NCBI-ProteinID:
XP_009997706
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MFHRNMMENVHLAPEADEDDLYSGYNDYNPTFDTEDLENDVAFQEAARTSSHGRRPPVTA
KIPGTSASRPLATALGSKATLTSSMGRPMTGAIQDGVSRPMTAVHAAGYTKAATRGSSFD
PLGQARGPAPPLEMKNSDSSEEKMRQLEKKVNELVEESCIANSCGDLKLALEKAKEAGRK
ERVLVRQREQISTPENINLDLTYSVLFNLASQYAANEMYAEALNTYQVIVKNKMFSTGGR
LKVNMGNIYLKQRNYSKAVKFYRMALDQIPSTHKEMRIKIMQNIGIAFIKTGQYFDAINS
FEHIMSVSPSLKAGYNLILCYFALGDGEKMKKAFQKLIAVPLEVDYDDKYISPNDDPHTN
LLIEAIKNDSLRQIEHKRKSMAEEYIMTAAKLIAPVIETSFAVGYDWCVEVVKASHYVEL
ANDLEINKATTYLRQQDFNQALETLKMFEKKDSRMKSAAATNLSFFYYLENELAQATNYA
DLAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSLCTEALYNLGLTYKKLNR
IDEALDCFLKLHAILRNSAQVLHQIANIYEIMEDPSQAIEWLLQLISVVPTDPRVLSKLG
KLYDNEGDKSQAFHYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAALILPTH
VKWQLMVASCYRRSGNYQKALEKYKVIHRNFPENVECLRFLVRLCTDMGLKEVQEYMTKL
KKVEKLKEIREQRIKSGRDGSARSRREGNAGSDGGGTKGERLSAKLKDMPGTSEPYESSS
SKEIDASYTDPLGPQAERPKTAARKRAEEDDFADEELGDDLLPE
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacaggaacatgatggaaaatgtgcatctggctcctgaggctgatgaagatgat
ctttattctggctacaatgactataatcccacatttgacacagaggatttagaaaatgat
gtagcttttcaagaggcagcaagaacaagtagtcatggtagaagaccccctgtgacagca
aaaatccctggtacatcagcttcaagacctttagctactgcattagggtcaaaggcaact
ttaacttcatctatgggaagaccaatgacgggagctatacaggatggagttagtcgacca
atgacagcagtgcatgctgcaggttacaccaaggcagccacgagaggttcttcatttgat
cctcttggtcaagcaagaggtcctgctccacctctggaaatgaagaattcagacagttca
gaagagaagatgaggcagttggaaaaaaaagtgaatgaactggttgaagaaagctgcatt
gccaacagctgtggagacttgaaattggctctggaaaaagcaaaagaagctggaagaaag
gaaagagtattggtgagacaacgtgaacaaatttctactccagaaaacatcaacttggac
ctcacttactcagttcttttcaatctggccagtcagtatgctgctaatgaaatgtatgct
gaagcactgaatacttaccaagttatagtgaagaataagatgttcagcactggaggcaga
ctgaaggtgaatatgggaaatatatatttaaaacaacggaactattcaaaagctgtcaaa
ttctaccgtatggctctggaccagattcctagtacccacaaagagatgaggattaaaata
atgcaaaatattggaatcgcatttattaaaactggccaatacttcgatgccattaattca
tttgaacatataatgagcgtgtccccaagcctgaaggcaggctacaacttgatcctgtgt
tattttgctcttggagatggtgaaaaaatgaaaaaagccttccaaaaactgattgcagtt
cccttggaagtggattatgatgacaaatatatttcaccaaatgatgatccacatacaaat
ctactgattgaagccattaaaaatgacagcttaagacaaatagaacataagaggaaatcc
atggcagaggaatacatcatgacagctgctaaactcattgcacctgtaattgagacatct
tttgcagtgggctatgactggtgtgttgaagtagtaaaagcttcccactatgtagagcta
gccaatgacctggaaataaataaagccactacttacttgaggcagcaggactttaaccag
gctctggagactttaaaaatgtttgaaaaaaaggatagccgaatgaagagtgcagctgca
acaaacttgtcattcttttattatttggagaatgaattggcacaagcaactaactacgca
gatttagctgtaaattctgataggtacaatccagcagctctaactaacaaaggaaatact
gtttttgcaaatggagactatgaaaaagcagctgagttttataaggaagctctcaggaat
gattctttatgcactgaagcactttataatcttggtttaacatacaagaagttaaacaga
atagatgaagctttggattgttttctgaagctccatgcaatccttcgcaatagtgcgcaa
gttcttcaccagatagcaaacatatatgagatcatggaagatcccagtcaagccatagag
tggctcctgcagctgatcagtgtagtaccaactgatccacgtgtactttcaaagctaggg
aaattgtatgataatgaaggtgataaatcccaagcttttcattattactatgagtcatac
cggtatttcccgtcaaacatcgaggtcattgagtggcttggagcctactacattgatact
cagttctgtgaaaaagccatcgagtactttgaaagagcagcacttatcctaccgacacac
gtgaagtggcagctgatggttgccagttgctacaggagaagtggtaactaccagaaagct
ctagagaaatacaaagtcattcacagaaacttcccagagaatgttgaatgcctccgattt
ttagttcgtctctgcacagatatggggctgaaagaagtccaggagtatatgacaaagctc
aagaaagtggaaaaattaaaagaaataagggagcagcgcattaaatctggcagagatggc
agcgcccggagccgcagagagggaaatgctggtagtgatggtggtggtaccaaaggggaa
agactgagtgccaaactaaaagatatgcctggaacaagtgaaccctatgaaagtagcagc
agtaaagaaatagatgcctcctacacagatccacttggcccacaagcagaaagaccaaaa
actgcagcaagaaaaagagctgaggaagatgacttcgctgatgaagaactaggagatgat
ttgcttccagaataa
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