Chaetura pelagica (chimney swift): 104391571
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Entry
104391571 CDS
T08631
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104391571 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104391571 (DROSHA)
03009 Ribosome biogenesis [BR:
cpea03009
]
104391571 (DROSHA)
03036 Chromosome and associated proteins [BR:
cpea03036
]
104391571 (DROSHA)
Enzymes [BR:
cpea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
104391571 (DROSHA)
Messenger RNA biogenesis [BR:
cpea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
104391571 (DROSHA)
Ribosome biogenesis [BR:
cpea03009
]
Eukaryotic type
90S particles
RNase
104391571 (DROSHA)
Prokaryotic type
rRNA processing factors
104391571 (DROSHA)
Chromosome and associated proteins [BR:
cpea03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
104391571 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
YcaO
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
104391571
NCBI-ProteinID:
XP_009999193
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSTQTYRPQNLRQLHPQQPSVQYQYDQQTAPPTTYSNPPAT
SYMPPRPDFVPYPPPVPPSSQNPISQCPMRPPFPNHQMRQSFPVPPCFPPAPPPVPNPSN
APVPGTPAGQSTFPYMMPPPTVPHPPPPPVIPQQVNYQPVYSTGYSQQSFPPPNFNSYQH
NSGSFQSSTANSSGGSSHFRHTGQYQGEKSQSDRRSPERSKHYDEHRHREHGHIHGDRHR
STNHGDRRDRGRSPDRRRQESSRHRADYDRGRISPHHRSYERNRERERERHRHRDSRRSP
SPDRCYKKDYKRAGSRSPSRERKRPRWEEDRERWCESQSSSKERSYTSIKDKESEENASE
KNEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDDELGKRQAK
AKAARPPWEPPKTKLDEDLETSSDSDCDSEDDSSCSSSSDSEVFDVIAEIKRKKAHPDRL
HEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKSCRPMTNNAGRLYHYRITV
SPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPE
NFCVRGLELFSSYLFKDILELYDWNLKGPSLDSDSVCCPRFHFMPRFVRFLPDGGKEVLS
MHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLD
REQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKL
SQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMH
LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMR
KKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLAT
YRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE
EAKQLFGRLLFNDKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIF
THVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLR
SSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVH
TFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTY
TVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWE
REHQEREPDETEEARK
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgtggtcaggggggaccaggagcaaggact
tcaacacagacttaccgccctcagaacctacggcagcttcacccacaacagccctctgtg
caataccagtatgaccagcaaactgcccctccaacaacctactcaaacccaccagccacc
agttacatgcctcccagaccagactttgtcccctatcctcctccagtgcccccttcctca
caaaatcccatcagccagtgtcccatgaggccaccgtttccaaaccaccagatgaggcag
agcttcccagtgcctccatgcttccctcctgctcctccgccagtgccaaatcctagcaac
gctcctgtgccaggaactcctgctgggcaaagcacctttccttacatgatgcctcctccc
acagtaccccatcctcccccaccgccagtcataccgcagcaagtcaactaccagcctgtg
tattccacaggatattcacagcagtcattcccaccaccgaacttcaacagctaccagcac
aactctggctcctttcagagcagcactgccaacagcagtgggggcagcagccatttccgg
cacacgggtcagtatcagggagagaagtcgcaaagtgatcgacggtctccagagaggagc
aagcactatgacgagcaccgacatcgcgagcatggccacatccatggtgacaggcatcgg
tccactaaccatggggatcgtcgggatcgaggccggagtccagacaggaggaggcaggaa
agcagtcggcaccgggcagattatgacagaggaaggatatcgcctcatcacagaagttac
gagcgtaacagggagcgggagagggagaggcataggcaccgtgacagcagacgatcacca
tccccagacagatgctacaagaaagattacaagagagcaggaagccggtctccaagcaga
gagagaaagagaccccgatgggaggaggacagagagaggtggtgtgagagccagagctcc
agcaaagagagaagttatacctccatcaaagacaaagaatcagaggaaaatgcatctgaa
aaaaatgaagaggaagatgaggaattacttaagccagtctgggttcgttgtacccactct
gagagctattattccaatgaccctatggatcaagtgggagactctactgtggtaggaaca
agcaagctccgagatctgtatgaaaagtttgatgatgagttaggtaagcgacaggcaaag
gccaaagcagccaggccaccgtgggagccaccaaagaccaaactggatgaagatttagag
acttccagtgactcagattgtgactctgaagatgacagtagctgctctagcagttcagat
tccgaagtttttgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctt
catgaagaactgtggtacaatgatccaggacagatgaatgatggacctttgtgcaagtgc
agtgctaaagcccgacgaacaggaataagacatggcatttatcctggtgaagagcccatt
aaatcatgtcgccccatgaccaacaatgctggaaggctataccactatcgaattactgtg
tcacctcccacaaacttcttaacagacagacccactgttattgagtatgatgaccatgaa
tatatctttgaagggttctcaatgtttgcacatgcccctctaacaaacattcctctgtgt
aaagtaatcagatttaacattgactatacaattcatttcattgaggaaatgatgcctgag
aatttttgtgtgagagggcttgagctgttctcttcgtatctattcaaagatattttggag
ctctatgactggaatcttaaaggtccttcacttgacagtgattctgtttgctgccccaga
tttcacttcatgccacgatttgtgagatttcttcccgatggaggaaaagaagtactctca
atgcatcagattcttctctacttgttacgatgcagtaaagctctagtgcctgaagaagag
attgctaacatgcttcagtgggaagaattggaatggcagaaatatgcagaagaatgcaaa
gggatgattgttaccagccctggcatgaaacccagctcagtccgtattgatcaactggac
cgtgaacagttcaatcctgatgtaattactttccccattattgtccactttgggatacga
cctgctcaactcagttatgcaggagatcctcaataccaaaagctgtggaagagttatgtg
aagctgcgtcacctgctggctaatagtcccaaagtcaaacaggctgataaacagaaatta
tcacaaagagaggaagcgctgcagaagattcgtcagaagaacacaatgagacgtgaagtg
accgtcgagttgagtagccagggattctggaaaacagggatacgctctgacgtctgccag
cacgcaatgatgcttcctgtcctcacccaccatgtccgctaccatcagtgtctgatgcat
ttagacaaattgataggctacacttttcgagatcggtgcttgctgcagcttgccatgact
catccaagccatcatttaaactttggaatgaacccggatcatgccagaaattccttatcc
aactgtggcattcgacagccaaaatatggagatagaaaagttcaccatatgcacatgaga
aaaaaagggataaacaccctgataaatattatgtcccgtttgggacaggatgatccagct
ccttccaggattaaccacaatgagcgtttagaatttctgggagatgctgtggtggagttc
ttaacaagtgttcacttgtactacttgtttcccactctggaggaaggaggtttagccacg
tatcgcactgccatcgtacagaaccaacacctggccatgttggctaagaagttggaacta
gatcgatttatgctgtatgctcatgggccagacctttgtagggagtcggatctccgccat
gctatggccaactgctttgaagccctaataggagctgtttatctagaggggagcctagaa
gaagcaaaacaattatttgggcgtttactcttcaatgacaaggacctgcgggatgtatgg
cttaattatccactacacccactccaactgcaggagtccaatactgacaggcaactcatt
gagacctctccagttcttcagaagcttacagagtttgaggaggcaattggagtcatcttt
actcatgttcggcttctagcacgtgcattcactctgaggacagtaggctttaaccatctg
actctaggccacaaccagaggatggaattcctgggtgactccataatgcagttggtagcc
acagagtatttattcatacattttcctgatcatcatgaagggcacttaacgctgttgaga
agttctttggtgaacaacaggacacaggccaaggtggcagaagagttgggcatgcaagaa
tttgccatcactaatgacaagacaaaaagacctgtagctcttcgaactaagactttggct
gatctcttggaatcctttattgctgccctgtacattgataaagatttggaatatgttcat
accttcatgaacgtatgcttttttccacggctaaaggagtttattttaaatcaagattgg
aacgatcctaaatctcaacttcagcagtgctgcttgactctcaggacagaaggaaaagaa
ccagacattcctctttacaagactttgcagacagtgggaccatctcatgccaggacatac
acagtagctgtttacttcaaaggagaaagaataggatgcggcaaaggcccaagtattcag
caagcagaaatgggagctgcaatggatgcacttgaaaaatataactttccccagatggcc
catcagaaacggttcattgaacggaagtacagacaagagttgaaagaaatgaggtgggaa
agagagcatcaagagagagagccagatgagactgaagaagcaagaaaatag
DBGET
integrated database retrieval system
