Chaetura pelagica (chimney swift): 104392298
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Entry
104392298 CDS
T08631
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104392298 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104392298 (CNOT1)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104392298 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104392298 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104392298
NCBI-ProteinID:
XP_009999984
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMATL
SLGGSSAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGISSQLPVGG
LTTGGLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTAATNTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRMA
AHHMMRNLTAGMAMITCREPLLMSIATNLKTSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDDRSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacccaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaaccccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatattcggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttctgcgttcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gagcagatcgacgcattcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagctaaaacaatgatggagagttccctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtggaagaatgtcggaacataatcatgcagttt
ggggtccgggaggtgacggctgcccaggttgcccgggtgctggggatgatggctcgaact
cactcagggctgacagatggtattcctttacaatctatttcggcccctggtagtgggatt
tggagtgatgggaaggataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaatccaagcctggacttcaaagtagtaacctatgaa
ttggaccatccaggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggc
atccagagagggctgggcatggaagtttttcctgtcaatgccatctacagaccctggaag
cacgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgaatctctcttacgactg
gcagaagtgggacagtatgagcaggttaaacagctcttcagttttcctatcaagcattgc
ccagacatgttggttttggccttactgcagatcaacacctcctggcacaccctgcgccat
gagctcatctccaccctcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttccatccgtcagctgatcatgcat
gccatggcagagtggtacatgagaggggagcagtatgaccaggctaaactctcacggatc
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagccttttatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagcttcctccagaaaccttggcgacgatgttggcatgtctgcaggcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtggccaactgcagtaacgtg
atgaacaaggccaggcagcccccacctggagtcatgccaaaaggacgccctcccagtgcc
agcagcttggatgccatctctcctgtacagatcgactcgctggcagggatggcaaccctc
agcttaggtggctcatctgctcctcacacccagagcatgcaaggcttccctccaaacctg
ggctctgcattcagtactcctcagtcaccagcaaaagccttcccccctctttctacccag
aaccagacgacaggtttcagtggcattggaggaatctcttcacagcttccagtaggtggt
cttactacgggtggcctgactggcataggaactggagctctaggccttcctgcagtgaac
aatgaccccttcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaattgatgatgaggcaaacagctacttccagaggatctacaaccatccacca
catcccaccatgtctgtagatgaggttttggaaatgctgcagaggtttaaggactccaac
atcaagcgggaacgggaggtgttcaactgcatgttgaggaacctgtttgaggaatatcgc
ttcttcccgcagtacccggacaaggagctgcacatcacagcctgcctctttggtgggatc
atagagaaaggactggtcacttacatggcactgggcctggccctacgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttgcaggagtacatagaatatggacagcaatcccgagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagtcccagcaaaagctcctcttgctggccaagtcagcactatagtc
accacctcaaccaccaccactgttgcaaaaaccatcacaatcacccgaccaactggagtc
agcttcaagaaagacgtgccgccttccataaataccaccaacattgacaccctgttagta
gccacagaccaaactgagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacccagaaggttgaagagttgaaggaa
acagtgaaagaagagttcatgccctgggtatcacagtatcttgtgatgaagagagtcagt
attgagcccaattttcacagcttatactcaaacttccttgacacactaaagaaccctgag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgctccttgttaaagaaccttggtcactggctggga
atgatcaccctggctaaaaataagcccatcttgcacacggatttggatgtaaaatcactg
ctactggaagcctatgtgaagggacagcaggagttgctttatgtggtgccatttgttgcc
aaagtcttggagtccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgcctgaagaatctggatgagcagctctctgctcccaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
gcagctaccaacaccacctgtacagccacagttcctccacagccccagtacagttaccat
gacatcaacgtctactctttgggaggcttggctccacacatcactttaaaccccacgatc
cccctgttccaagcccacccccagctgaagcagtgcgtgcggcaggcgatagagcgggcg
gtgcaggagctcgtccatcccgtggtggatcgatccatcaagattgccatgactacgtgt
gagcagatagtcaggaaggactttgccctggattctgaggagtcacggatgcggatggct
gcacaccacatgatgaggaacctgactgctgggatggccatgatcacctgcagggaacct
ttgctaatgagcatagctaccaacttgaagactagttttgctactgcgctgagggcagcc
tccccacagcagagggacatgatggagcaggcagcagcccagttagcccaggataactgt
gaactggcctgctgcttcatccagaagacagctgtggagaaggcaggccctgagatggac
aagaggctggccactgaatttgagctcaggaaacatgctcgacaggagggtcgtcggtac
tgtgacccggtggtgctgacctaccaggctgagcggatgcccgagcagatccggttaaag
gttggaggggtggacccaaagcagctggctgtttatgaagagtttgcacgcaacgtcccg
ggcttcttgcctaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
cagcaggcttgggctacagatgatgtagcccagatctatgacaagtgtatgacagaactg
gagcagcacctgcagtccattccacacaccctggccatgaatcctcaagctcaagccttg
cgcagcctcttggaggctgtggtggtggctcggaattcccgggatgccattgctgccctt
gggctgctgcagaaggctgtagagggcttgctggatgccactagtggggcagatgctgac
ctcctgctccgctaccgggagtgtcacctgctggtgctgaaggctctgcaggatggccgg
gcctacggatctccctggtgcaataaacagatcactaggtgcctgattgaatgcagagat
gaatacaagtacaacgtggaagctgtggagctgctcatccgaaaccacctggtgaacatg
cagcagtatgaccttcacttggctcagtcaatggagaatggcctgaactacatggctgtg
gcctttgccatgcagctggtgaagatcctgttggtggatgataggagtgtggcccatgtc
actgaggcagatctgttccacaccattgagacactcatgaggattaatgctcattccaga
ggaaacgccccagaagggttaccccagctgatggaagtggtccgatcaaactacgaagcc
atgattgaccgtgctcatggaggtcccaatttcatgatgcattcaggcatttcccaagcc
tctgagtatgatgatccaccagggctgagggagaaggcagagtatctgctgagggagtgg
gtgaacctctaccattctgctgcagcaggccgtgacagcaccaaagctttctctgcgttt
gttggacagatgcaccagcaaggaatcctgaaaactgatgacctgatcactcggtttttc
cgcctttgcacggagatgtgtgtggaaatcagctaccgtgcccaggctgagcagcagcac
aaccctgctgccaaccccaccatgatccgagccaagtgctaccacaacctggacgccttc
gtgcgcctcatcgcgctgctggtgaagcactcgggggaggccaccaacacggtcaccaag
atcaacctcctcaataaggttctgggaattgtggtgggagtccttttgcaagaccatgac
gttcggcagagcgagttccagcagcttccctaccatcgcatcttcatcatgttgctcttg
gaattaaatgctcctgagcacgtcctggagaccatcaacttccagacactgacagctttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttactgattgatcttttcaagtacctggctcctttcctt
cgaaatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttg
ctggtcctgctgcatgacttcccagaattcctgtgtgactaccactatgggttctgtgat
gtgatcccacccaactgtatccagctaaggaatctcatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaatttaaaggtggacatgttgagtgagatcaat
attgctccacgaatcctcacgaatttcactggggtgatgccacctcagttcaagaaggac
ctggattcctatctcaaaacccgctcccccgtcacctttctctctgacttgcgcagcaac
ctacaggtctccaacgagcctggcaaccgctacaacatccagctgatcaatgctctggtg
ctctacgtgggtactcaagctattgcccacatccacaacaaaggcagcacaccctccatg
agcaccattacccactcagctcacatggacatcttccagaacttggcagtggacctggac
actgaaggtcggtacctgttcctgaacgccatcgccaaccagctgcgctaccccaacagc
cacacccactacttcagctgcaccatgctgtacctctttgctgaggccaacactgaggcc
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctcctcattactttcattgagctgataaaaaatccagcctttaagttctggaac
catgagtttgttcattgtgctccagagattgagaagttgttccagtcagttgcacagtgc
tgcatggggcagaagcaggcccagcaagtcatggaagggactggtgccagttag
DBGET
integrated database retrieval system
