Chaetura pelagica (chimney swift): 104392450
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Entry
104392450 CDS
T08631
Symbol
PTBP1
Name
(RefSeq) LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104392450 (PTBP1)
03041 Spliceosome [BR:
cpea03041
]
104392450 (PTBP1)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
104392450 (PTBP1)
Spliceosome [BR:
cpea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104392450 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
104392450
NCBI-ProteinID:
XP_010000152
LinkDB
All DBs
Position
Unknown
AA seq
639 aa
AA seq
DB search
MLVMELTLDASALGVVREKNKFCCRKSCSFLALLGLGSPPSQSNNFSLYKLSLAHLQRQL
CTLTCFFXYCCKLCWIIVANLSNFFNPFLSFFYSIVQDITVGTKRGSDELFSACVTNGPF
IMSGNSSAANGNDSKKFKGDSRSAGVPSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLM
LKGKNQAFIEMNTEEAANTMVNYYTTVTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAA
LQAVTSVQNASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF
TKNNQFQALLQYADPLSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYT
RPDLPSGDNQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAP
LAIPAAAAAAAGRIAIPGLTGAGNAVLLVSNLNSERVTPQCLFILFGVYGDVQRVKILFN
KKENALVQMADGNQAQLAMSHLNGQKLLGKPIRITLSKHQTVQLPREGQEDQGLTKDYGN
SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKMLFSSNGGMVKGFKFFQKDRK
MALIQMGSVEEAIQSLVDLHNHDLGENHHLRVSFSKSTI
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgatggagttgactctcgacgcttcagctcttggtgtagtcagagaaaagaac
aagttctgctgtaggaagagctgcagttttctggcattgctgggtcttgggtctccacca
tcacaatctaataatttttctttgtataaactgtccttggctcacttgcaaagacaactg
tgcactttgacttgcttttttncttactgctgtaaactatgctggataattgtggcaaac
ctatctaacttttttaatccttttctttcttttttctacagcattgtccaagatataaca
gttggtacaaagcggggatctgacgagcttttctctgcttgtgtcactaacggacccttt
atcatgagcggcaactcttctgcagctaatggaaacgacagcaaaaagttcaaaggcgac
agtagaagcgctggggtcccctcccgagtgatccacgtgcggaagctccccagcgacgtc
acggaggcagaggtcatttctttgggcctaccttttggcaaggtcaccaatctcctaatg
ttgaaaggaaaaaaccaggctttcatagagatgaacacggaggaggcagccaacaccatg
gtcaactactacaccacagtcactccagtcctgaggagccagcccatctacatacagttc
tccaaccacaaggagcttaagacagacaactctccaaaccaagcacgtgcccaggctgct
ctgcaggcagtgacctctgttcagaatgcctccgctgcagctgtggatgcaggaatggcc
atggctggacagagccctgtcctgaggatcattgttgagaatctcttctatcctgtcact
ctagatgttctgcaccagattttttccaaatttggtactgttctgaaaatcatcacgttc
acaaagaacaaccagtttcaggccctgttacaatacgctgaccctctgagtgctcagcac
gccaagctgtctctggatggacagaacatctacaacgcctgctgcacgctgcgcatcgac
ttctcaaagctcacaagtctcaatgtaaaatacaacaatgataagagcagagattatacc
cggccagacctaccttctggggataatcagccctctctggatcagactatggcagctgct
tttggtgcccctgggataatctctgcttctccatatgctggagctggcttccctcctacc
tttgcaattcctcaggctgcaggcctgtcagttccaaatgttcatggagcactagctcct
ttggctatcccagcagctgcagcggctgcagcaggacggattgccattcccggcctcact
ggggcagggaacgctgttctgctggttagcaatctgaactctgagagagttacaccccaa
tgcctctttattcttttcggagtctatggtgatgtgcagagggtgaagattttatttaat
aagaaagaaaatgccctagttcagatggctgatggaaaccaggcccagcttgccatgagc
cacttaaatggccagaagctcctggggaagcccatccggatcaccttgtccaagcatcag
acagtgcagcttccccgtgagggacaggaggaccaaggtctgactaaggactatggaaat
tctcctcttcatcgtttcaagaaaccaggctccaaaaatttccaaaacatctttccgcct
tctgccactcttcatctgtccaatattccgccttcaataagtgaagaagaccttaagatg
ttattttcaagcaatggtgggatggtcaaaggattcaaattcttccagaaggaccgtaaa
atggctctgatccagatgggctctgtggaagaagccattcaatcacttgttgacctccat
aatcacgacctgggtgagaatcatcacctgcgtgtgtccttctcgaagtccaccatttaa
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