Chaetura pelagica (chimney swift): 104393803
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Entry
104393803 CDS
T08631
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cpea01002
]
104393803 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpea04121
]
104393803 (USP42)
Enzymes [BR:
cpea01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104393803 (USP42)
Peptidases and inhibitors [BR:
cpea01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104393803 (USP42)
Ubiquitin system [BR:
cpea04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104393803 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
104393803
NCBI-ProteinID:
XP_010001626
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MTIVNKPKSSKSKKSSSRRSNKSKKPRTKKMTSRTANLGRVPPAEDPNKVSVDKGPGGAI
YCRTSQKAKPFARRDLVVNDGIAPPQMILFPPEKICMDWEQTQSVGVGLLNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHTQSCGEKDFCMMCAMETHINQVLCCSNAPIKPTSVINGLK
RIGRNFHFGSQEDAHEFLSFTVDALQKACLNGSTKLDRSSQATTLIYQIFGGYLRSRVKC
MNCKAVSDTYEPFLDISLDIKAVTSITRALEQYVKPEQLDGENSYKCSKCKKMVPASKRY
TIHRSSNVLTLSLKRFANYTGGKINKEVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHNG
FSCNAGHYICYIKAGNGRWYRMNDASVELSDIKTVLNQQAYVLFYIRRYDLSLGERAFYL
PAPSYPRSFLGQRGANSKQAGFMGPRLPPHMIKNSSRLNGNGPLKEDPNTVGVTLKRPSS
APPTACVQNWAITRPSLTDASKSQKITISIHNKLPARQTVSRPACPSSAVEDEDLSKPVP
SSTITNYSAAESTSNTSVVSVAADISKQEVPDEIFVNPAVNGNAKVSSSNTVPYSAEPSG
KSEETKGLFKRNCNVVSSNGILMGKVVHALQNSHASCQNAEERSQHELPKSDSLNGAISL
DNESKENGPKRNDSTCQVPPVKPSEIFFSKTNGLLDTMPIPQEIILESLMYSQMNILPEE
TSVPGPQKCSENDTRMDTVVMEALFAYEEPRKVASNFSCNTENLFTQSDCETISAKDVAE
SIIKKADNAHPNVNGQHKVRKKTLDNEEDFLGHCESEQSRDKDRPRRSKETEVISKEIKR
SPEIKEKLGQTSSIKEDVECSSKKLVSLDTTDKCQVTKDISNNSLDIPPVNGSAVTNQNK
LLKSEFSRENKGLSNRKSEEDKYRKKYKKREYDSQKSDKEHYRKKREISDTEEEKQSRSK
ADDSYKRQCSRSMETSKHNRNKQEYCNDSKYRSFHSERNSPNDGKSSGKYPQHRSRSREG
MEQDRNRYYLYKRERTWSRERYHQDQLRRWEKCKYYNDYYSCYGTRDGRERKSFYCDKDC
DKWNQTYNRSHKDYHSKSRQPHSAFSRDEDVYHLGSHRANLHHCSVPQQYSEKYSRERHA
LPPGPGHSHFEDSSWENEKAKQRNSKRKYTYGEGSGSETEKKCRKTDDQRMKKEVKKVKK
KKKSKEKHREKDYKHYDLDFSVLRFENDNRKHKKKKKKKEQIRKPKDFLEYLDARFQNKT
REKKEESCPPGDSLSEQYRNQGRVSSKAGNPSSPAGNSKKRSSITSSEDVKGSRAALRPR
GLRLPPRPGLELPPPVSAGPAGPGRPGAARHTEVGKHPESLGLQANTSQSRGEPLDARII
RSYLTKGFSSKAGHHLLPKGRYQLELWTFSNEKRVFILCVSRLPPNCFENAITRLGSPVK
PPAQPCHGAAVQTGEHEGDGAALGGTGVRAVSGSSYKAGEFQEVSPSWISRFKASNACEC
VRVFSRAKPKLAPALSSYSFPSNLVLLKPQQIYNMREVLLNKKQINPVIKSHCCSRVNEQ
AGMSLILRANTAPHPCLAQGLQAQTFAAWTCTYFSADQPSPLCPVPLPLACRTASRLGLQ
EGSFRVPGVVPGLVVTDSKTGTARVCSGCFLLRSVPLALRSAAVWKCSLELRDVNVPALR
NRGRKCSSDGCSAVNGTVASADFRCEKMVSATKSCSIHRSPNVLILSLKRFTNDTGGKIN
KEVKYPEYLDLRTYMSQSSGEPLWYRVYVVLVHKGMEYGALHLLHKVGYQLDF
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaaatctaaaaaatcatcatcaaggcgatct
aacaaatctaagaaaccccgtactaaaaaaatgacatcacgcactgcaaatttgggccgg
gtaccacctgcagaagatccaaacaaagtctctgtagacaaaggacctgggggtgctatt
tattgtagaacatctcaaaaagctaagccctttgcccgaagagatctagttgtcaatgat
ggaattgccccgccacaaatgattctttttccaccggagaaaatttgtatggattgggaa
caaacacaaagtgttggagttggactgctcaatcttggcaacacctgtttcctcaattct
actctgcaatgtctgacctacacgcctcccctcgccaattacatgctttcccttgaacac
acccagtcgtgtggtgaaaaagacttctgtatgatgtgtgcaatggaaacgcacattaac
caggtcttgtgttgctctaatgctcccatcaaacctacatctgttatcaatggccttaaa
agaattggaagaaatttccattttggcagtcaagaggatgcacatgaattcttaagtttt
actgttgatgctttacagaaagcttgcttaaatggaagcacgaaactggacagatcctct
caagccaccacacttatttatcaaatatttggaggttatctgagatcccgagtgaagtgc
atgaactgcaaagctgtttctgacacatacgagccgttccttgacatttctttggatata
aaggcagttacgtccattaccagagctctagaacaatatgtgaaaccagaacaactagat
ggtgaaaacagctataagtgcagcaagtgtaaaaagatggttcctgcatcaaagaggtac
acaatacatcgatcttccaatgttcttacactatcactgaaaagattcgctaattacacc
ggtggaaagatcaacaaggaagtaaaatatcctgaatatttggatcttcgggcatatatg
tcccaatcaattggagaaccactcatctatgctttatatgcagttcttgtacataatggt
ttcagctgtaacgcaggacactatatctgctacataaaggctggtaatgggcgatggtat
cgaatgaatgatgcctcagtagagctttctgatatcaaaacagttctcaatcagcaagct
tatgtacttttttatatcaggcgctatgatctgtcacttggagaacgtgcattttacttg
ccagctccgtcctatccccgttccttcctgggccagcgaggggctaatagtaagcaggct
ggatttatgggaccacgacttcctcctcatatgattaagaattcaagtcgtttaaatgga
aatggacccctaaaagaggatccaaatactgttggcgtcaccctgaaaaggccatcgtca
gctccaccgacagcgtgtgttcagaactgggccattaccaggccttcacttactgatgca
tcaaaaagtcagaaaatcaccatcagtattcacaacaaactgcctgcacgtcagaccgtg
tcccgccccgcctgtcctagtagtgctgtggaggatgaggacctaagcaaacctgttcct
tcatccaccattaccaattattccgcagcggagtctacctcaaatacatctgtagtgtca
gttgctgctgacatttctaaacaggaagttcctgatgaaatttttgtcaacccagcagtg
aatggaaatgctaaagtaagctccagtaacacagtcccttacagtgcagagccttcagga
aaatctgaggagacgaagggcttgtttaaacggaactgcaacgtagtgtcttctaatgga
attttgatgggaaaggtggttcatgcattgcagaattcccatgcttcctgccagaatgct
gaagaaagatcccagcatgagctgccaaaaagtgattcactcaatggtgctattagttta
gataatgaatctaaagaaaatggaccaaaacgtaatgattccacttgccaagtgccacct
gtaaaaccatctgagattttcttttctaaaacaaatggattgcttgacacaatgcctata
cctcaagaaataatactagagtctctcatgtatagccagatgaacatcttaccagaggaa
acaagtgtccctggacctcagaagtgttccgagaatgatactcgtatggatactgtagta
atggaagcgttgtttgcatatgaagaacctaggaaggttgcttccaactttagctgcaac
actgagaacctttttactcaatcagactgtgaaaccatttctgccaaagacgttgctgaa
agtattattaaaaaagctgataatgcacatcccaatgttaatggtcagcataaggtgagg
aaaaaaaccttggacaatgaagaagatttccttgggcattgtgagtcagagcagagtaga
gacaaagacagaccaagaagatcaaaagaaactgaagtaatttcaaaagaaatcaaaagg
tctcctgagatcaaagaaaaactagggcaaacctcctctataaaggaggatgttgaatgt
agttctaaaaaacttgtatctctagataccacagataaatgccaagtcacaaaggacatt
tctaacaattctctagacataccacctgttaatggctctgctgttacaaaccagaataaa
cttttgaagagtgaattttccagagaaaacaaaggactgagtaacagaaaatctgaagaa
gataagtataggaaaaaatataagaaaagagaatatgactctcaaaaaagtgacaaagag
cactaccgaaaaaagagagaaatctcagatactgaagaggagaagcaaagcagaagcaaa
gcagatgattcctacaagaggcagtgctctcgcagcatggaaacaagcaagcacaatcgt
aataagcaggagtattgtaacgacagcaagtatagatctttccatagcgaaagaaacagt
ccgaatgatggcaaaagctcaggaaaatatcctcagcatagatcgcggagcagagaagga
atggaacaggacaggaataggtattatctttacaaacgagagagaacttggagtcgagaa
agataccatcaagatcagctacggagatgggaaaaatgcaaatactacaatgattattat
tcctgttatggaacaagggatggtagagaaagaaagtccttttattgtgataaagactgt
gacaaatggaatcaaacttacaacaggtcacataaggattatcatagcaaaagcagacag
cctcacagtgcattctctagagatgaagatgtgtatcacttaggcagccacagagcaaat
ttacatcattgttcagtacctcagcagtactcggaaaaatactctcgtgaaaggcacgca
cttccacctgggccaggtcattcacattttgaggactcttcctgggaaaatgaaaaagca
aaacaaagaaacagcaaaagaaaatacacctatggagaaggaagcggaagcgagacagaa
aagaaatgccgaaagacagatgaccaaagaatgaagaaagaagtgaagaaggtcaagaag
aaaaagaagtccaaagagaaacatcgagagaaggattacaaacattatgatttggatttc
tctgtgctccgctttgagaatgacaatcgcaaacataagaaaaagaagaaaaagaaggaa
caaatcaggaaaccaaaagacttcctggaatatttagatgctcgtttccagaataaaaca
cgggagaagaaggaagaatcctgtcctccaggcgactccttaagtgagcaatacagaaac
cagggcagggtttcctccaaggcagggaatccttcaagtccagcaggtaacagcaagaaa
aggagctccatcacatccagtgaggatgttaaaggctcccgggccgcgctccggccccgc
ggcctccgcctcccgccccgcccgggcctggagctgccgccgcccgtgtctgcgggcccg
gccggcccgggacgtcccggtgcggccagacacaccgaggtgggaaaacatcctgaaagt
ttgggtcttcaggcaaatacgtcccagtcaagaggagaaccacttgatgcacggattata
cgcagttacttaacgaaaggcttcagctccaaggcaggacaccatctcctgcctaaaggt
agataccagctggaattatggactttttcaaatgaaaaacgtgtttttattttgtgcgtt
tcccggttacctccgaattgttttgaaaatgcgatcacgcgcctaggaagccctgtcaaa
ccaccagcccagccctgtcacggcgctgctgtgcaaacaggggagcacgaaggtgacggg
gccgcgctgggaggcaccggtgtgagggctgtgagcggcagttcttacaaggctggagaa
ttccaggaggtgtcaccttcctggatctcccgtttcaaagcatcaaatgcctgtgaatgt
gttcgggtgttttcacgtgcaaagcctaaactcgcaccagccctgtcatcttactccttt
cctagtaacttagtgttgcttaagccacaacaaatctacaacatgagagaggttttgctg
aataaaaagcagattaacccagtcatcaaatctcactgctgctcgcgagtgaacgagcag
gcaggaatgagtttgatcctgcgggcaaacaccgctccccatccgtgcttagcgcagggt
ctgcaggctcaaacttttgctgcttggacctgtacgtatttcagtgcagatcaaccaagc
cctttgtgcccggtgcccctgcccctcgcctgcagaaccgcctcccggctcgggctgcag
gagggttcatttcgcgttcctggcgtggtgccgggattagttgttaccgacagtaaaacc
ggcacagcgcgtgtgtgttcgggctgtttcctccttcgctctgttcctttggctctcagg
agcgctgccgtgtggaagtgcagcctggagctgagagatgtaaacgtgcctgctcttcgg
aacagaggtagaaaatgcagttctgatggttgcagtgctgtaaatgggactgtggccagt
gcagacttcaggtgtgaaaagatggtttctgcaaccaagagttgttccatccatcgctct
ccaaatgttctgatcctgtcactgaaaaggttcacaaatgacactggtggaaagatcaac
aaggaagtaaaataccctgaatatttggacctccggacatacatgtcccaatcaagtgga
gaaccactctggtacagagtatatgtggtgctggttcataaaggcatggagtatggggca
ctacatctgctacataaagttgggtatcagcttgatttctaa
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