Chaetura pelagica (chimney swift): 104394263
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Entry
104394263 CDS
T08631
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104394263 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104394263 (LIG3)
Enzymes [BR:
cpea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104394263 (LIG3)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104394263 (LIG3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
FMP23
mRNA_cap_enzyme
aRib
Motif
Other DBs
NCBI-GeneID:
104394263
NCBI-ProteinID:
XP_010002133
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKL
DKARATTKKIEDITDLEGWEELQDGEKELINKHISEANSKTGSTPKKKVIVQAKLTATGQ
LTTKDPLITPSPKKFSGFTAKPKNSEAVAGNAPPQRSLSAEQCEPGHKDCLLREFRKLCA
MVAEKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFS
RIFNCSQEEMVRDLEQGDVSETIRLFFEQSKTCPPAAKSHLTIQEVDEFLIQLSKLTKED
DQQSVLQRITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQDVV
ERVLRNRQEAQTAPGVKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDG
ERVQVHKNGDHFSYFSRSLKPFLPHKVAHFKDYIPQAFPGAQSMILDSEVLLIDNKTGKP
LPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNRILFS
EMKHVTKASDLADMITRVIREGLEGLVLKDIKSNYEPGKRHWLKVKKDYLNEGAMADTAD
LVVLGAFYGHGNKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDDATLARLQKELDMVKIS
KDPSKIPKWLKINKIYYPDFIVPDPKKAPVWEITGAEFSRAEAHTADGISIRFPRCTRIR
DDKDWQTATNLQQLKELYQLSKEKADFSVVAGEEDESTAGSSGENEGNSRSSTPHSTIKT
PPSKSPAKAKKPEESKAVIGSPQKTEERRGEKRKASEMEDNGKKVLLDIFTGVKLYLAPS
VKDFDKIRRYFIAYDGDIVPEFDAASATHVIGDTDDNPGAKRVSPKWIWECIRKKSLVAP
Y
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcagaggtactgtgtggactatgccaagcgtggcaccgcaggctgcaagaag
tgcaaggagaagatagtgaaggggatggtgcgcattgggaagattgttcccaaccctttc
acggagtctggcggggacatgaaggagtggtaccatgtgaagtgcatgtttgagaagctg
gacaaagctcgggccaccaccaagaaaatcgaagacatcacagacttggaaggctgggag
gagctccaggatggggagaaggaattaatcaacaagcacatctcagaagctaattccaag
actggaagtacacccaagaagaaagtgatagtccaagctaagctcactgccacaggacaa
ctaactacaaaagatcctctcatcactccatcaccaaagaagttctctggcttcacagcc
aagccgaagaattccgaagccgtggctgggaacgcccccccgcagcgcagcctgtcggcg
gagcagtgtgagcccgggcacaaggactgcctcctgcgggagttccgcaagctctgcgcc
atggtggccgagaagcccagctacaacgtcaagacccagatcatccaggacttcctgaag
aagggctcgggaggagatggctttcatggtgatgtgtacctgaccattaagctgctgtta
ccaggtgtcattaaaattgtttacaatttgaatgataagcagattgtaaaactcttcagt
aggatttttaactgcagccaagaagaaatggtccgggacctggaacaaggagatgtttcc
gagaccatacgcctcttctttgaacagagcaagacttgtcctccagcagccaaaagtcac
ctgaccatccaagaggtggatgaattcctcatccagctgtcaaagcttaccaaggaggat
gaccagcaaagtgtgctgcaacgcatcactcgcagatgtacgggcaacgacctgaagtgc
atcatcaggctaattaaacacgacttgaaaatgaatgctggagcaaagcatgtgttggat
gctttggatcccaacgcttacgaggccttcaaagcctcccgcaacctgcaggacgtggtg
gagcgagtcctgcggaaccgccaggaggcccagacggcaccgggcgtgaagagaaccctg
agcgtgcaggcctcgctgatgaccccggtgcagcccatgctggctgaagcctgcaagtcc
atcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggc
gagcgggtgcaggtccataaaaatggagatcacttcagctacttcagcaggagcctcaaa
cctttcctcccacacaaagtagcccattttaaggactacatccctcaggccttccccggt
gcgcaaagtatgatcctggattcagaagttcttttgattgacaacaaaactggcaagcca
cttccttttgggactcttggtgtgcataagaaagctgctttccaggatgccaacgtttgc
ttgtttgtgtttgactgcatctatttcaatgacatcagcctgatggacaggcccctgtgt
gaacgacgcaagtttctccacgacaacatggtggaaattcccaacaggatcctcttctcg
gagatgaagcacgtcacaaaagcttcagatctggcagatatgatcacccgagtcatccgt
gagggactggaaggactggtgctgaaagatataaagagtaattatgaaccaggcaaacgc
cactggctgaaggtgaagaaggactacctgaatgagggtgccatggctgacacagcagac
ctggtagtgctgggagctttctatggacatggcaataaaggtgggatgatgtccatcttc
ctcatgggctgctatgatcccaagagtgagaagtggtgcactgtgaccaagtgttctggt
ggccatgatgatgctaccttggcacgtctgcaaaaagagctagatatggtgaagatcagc
aaggatccgagtaaaattccaaagtggctaaaaattaacaaaatctactacccagacttc
attgtcccagacccaaagaaagctccagtgtgggagatcacgggagcagagttctccaga
gctgaggcccacactgcagacgggatctccattcgcttcccccgctgcacccgcattcga
gatgacaaggactggcagacagccaccaacctccagcagctcaaggagctgtaccagctc
tccaaagagaaggccgatttcagtgttgttgctggggaggaagatgagtccacagctgga
agcagtggagagaatgagggaaattccaggtcttccacaccacacagcactatcaaaact
cctccaagcaagtcacctgcaaaagccaagaagccagaagagagcaaagcagtcattgga
tcacctcaaaaaacggaggagagacgaggggagaagagaaaagcatccgagatggaagac
aatggaaaaaaggtcctgctggacatcttcactggggtgaagctttacctggcaccctcc
gtgaaggactttgacaagatccggcgctacttcatcgcctacgacggggacatcgtgccc
gagtttgatgcagcctcagccacccacgttattggggacactgatgacaatcctggtgct
aaacgtgtgtcccccaagtggatctgggaatgcatccggaaaaaaagtctggtggccccg
tactag
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