Chaetura pelagica (chimney swift): 104394392
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Entry
104394392 CDS
T08631
Symbol
TRUB1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpea03016
]
104394392 (TRUB1)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
104394392 (TRUB1)
Transfer RNA biogenesis [BR:
cpea03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
104394392 (TRUB1)
Prokaryotic type
104394392 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
104394392
NCBI-ProteinID:
XP_010002280
LinkDB
All DBs
Position
Unknown
AA seq
206 aa
AA seq
DB search
VGIGKGTKMLRTMLAGSKKYTAIGLLGKATDTLDATGKVTEEKPYDQITKGDLENVLQKF
TGEIMQVPPLYSALKKDGERLSTLMKRGEAVEAKPARPVRVYSLSLQQFQPPLFTLDVEC
GGGFYVRSLVSDIGKELSTCATMQELTRTKQGPFTLEEHALYEDKWTIDEIARSLERCMS
LLPGEPSHKKLKTEHPGETAVSCEDK
NT seq
623 nt
NT seq
+upstream
nt +downstream
nt
ttgttggtattggaaaaggaacaaaaatgctgaggactatgttggcaggttccaagaagt
acactgctattggactactgggcaaagctacagatacattagatgctacaggaaaagtaa
ctgaagaaaaaccttatgaccagataacaaaaggagatcttgaaaatgtgctgcagaagt
ttacaggggagataatgcaggttcctccgctctattctgctttgaagaaggatggagaaa
ggctatcaactctgatgaagagaggagaagcagttgaagcaaagcctgctcggccagtaa
gagtatacagcctctctctccagcagttccagcccccactgttcacactggatgttgagt
gtggtggtggcttttatgtcaggagcctggtcagtgacattggcaaagaactctctacct
gtgccactatgcaagaactgacccgaaccaaacaggggccatttactcttgaggagcatg
ccctgtatgaagacaaatggacaattgatgaaattgcacgatccttggagcgttgcatgt
ctcttctcccaggagagccatctcataaaaaattgaagacagagcatcctggtgaaactg
ctgtgagctgtgaagataagtga
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