Chaetura pelagica (chimney swift): 104395536
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Entry
104395536 CDS
T08631
Symbol
EXOSC10
Name
(RefSeq) LOW QUALITY PROTEIN: exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104395536 (EXOSC10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104395536 (EXOSC10)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104395536 (EXOSC10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
104395536
NCBI-ProteinID:
XP_010003546
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MGPVPALGSSPQRGAVGQTPWAGLGLAAPQLWACWSDGALPRAVVGRVAMGIAPGTSAAG
FALGTVVAATKASSGLPQPGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHL
KDRSKVTELEDKFDMLVDNRGLILTPLFSGTXGILLDEAAGVNKNQQPVLPAGLQPPQTI
ISSWNRKAGESHKRTQPETFRLLHAKNITRPQLKFREKIDNSNTPFVPKLFIKPNALKPL
PEALTKSGRERKERPEDLDVPAALADFIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLT
KPEPQMYRPVKETPCHFITTLDELVELNEKLMNCKEFALDLEHHSYRSFLGLTCLMQIST
RTEDFIVDALELRSDMNLLNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAA
RLLNLGRHSLEHLLKLYCDVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYDKVRE
ALWERGNEQPTQLQVVWQRSRDICLKKYIKPLFTDESYLELYRRQKKHLNTQQLAAFRLL
FAWRDKIARQEDESTGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLVRQQINELHLLI
QQAREMPLLKSEIAVAVKKRAPQSNPERLENTFFGPHDSSRVPGDDFQNNSASDSEKTMN
IQGVQPEPTCLVATATVSIFSECDEDEGNEKVLTTAQQKAQRIMESFENPFRMYLPSEQN
PAHVSQSAKFDPSSKIYEISNRWKLMSQTQVQKEPKDETKKKAAQQSAAREQAQKAHEEA
TENIVSVRQQAMQEQANKKRERIMSETGTELPKQEKKRPKASQQPEELEAPKQFTPFDYS
KSNFKVFAGSSKSKQSPQFDPAKQAYTGKKFAGANKLQQSGNRSMSYLAGKAERSSRHHW
PKR
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggggcctgttcccgccctgggctcttctcctcagcgcggtgctgtgggacaaaccccc
tgggctgggctgggcttggccgccccgcagctctgggcgtgctggagtgatggggccctc
ccgagggccgttgttgggcgtgtggcgatgggcattgcccctgggacatcagctgcgggg
tttgctctcggcacggtggtggctgcgacgaaggcctctagtgggctccctcagcccgga
gatgaatacgacttctaccggagcttccccggcttccgggcctactgtgagacacaggga
gaccgtctcctgcactgcatgagcaaggtgatgcagtaccatggctgccgcagccacctg
aaggatcgcagcaaagtgacagagctggaggacaaatttgacatgctggttgataacagg
ggtttgattttaacgcctctcttttctggaacttagggtattttattggatgaagcagca
ggagtgaacaaaaaccagcaaccagtcctccctgctgggttacagcccccccagaccatc
atttccagctggaaccgcaaggcaggagaatcccacaagagaactcagcctgaaaccttc
cgactccttcatgccaagaacatcactcgaccacagctcaagtttcgggaaaaaattgac
aattccaacactccttttgtacctaaactttttatcaagccaaatgctttgaaacctttg
cctgaagccctcacaaaaagtggacgggaacgaaaggagcgccccgaggacttggatgtg
ccagctgctttggcagacttcatacaccagcagaggacgcagcaaactgagcaagacatg
tttgctcacccttaccagtatgagctggaacatttttctccaccagatggagttctgaca
aaaccagaaccccagatgtacaggcctgtcaaggaaacaccctgtcattttatcaccaca
ctggatgagctggtagaactaaatgaaaagcttatgaactgtaaagaatttgccctggat
ttggagcaccattcctacaggagcttcctgggcttgacttgtctgatgcagatttccacc
cgaacagaagacttcattgttgatgccctggaattgcgcagtgacatgaaccttctcaac
gagaccttcacagaccctgcaattgtgaaggtccttcatggtgctgattcagatgtggaa
tggctgcaaaaagactttggtctgtacttggtgaacatgtttgatactcaccaagctgct
cgtctcctcaatcttggcaggcattctttggagcacttgctgaagctgtattgtgatgtt
gatgctgacaagcagtaccagctggctgactggaggatacgccctttgccagaggagatg
attcaatatgcccgtgatgacacccactacttgctctacatctatgataaagtgagggag
gcgctgtgggagagagggaacgagcagcccactcagctgcaggttgtgtggcaacgcagc
agggacatctgcctgaagaaatacatcaagcccctcttcacagatgaatcctacctggag
ctctacaggaggcagaaaaaacatcttaacacacagcagctagcagcatttaggttgctg
tttgcatggagagacaagatagcacgtcaagaggatgagagtacaggatacgtgctacca
aatcatatgctattgaagatagcagaggagctgcccaaagaaccccagggcatcattgct
tgctgtaatccagtcccaccactagttcgccagcagattaatgaattgcatcttctcatc
cagcaggcccgggagatgcctctcctcaagtcagagattgctgtggcagtcaagaagaga
gcacctcagtccaaccctgagaggctggagaacaccttctttggaccacatgacagttct
cgggttcctggtgatgattttcagaacaactctgcctcagacagtgagaagacaatgaat
attcagggtgttcagccagagccaacatgtcttgttgctactgccactgtcagcatattc
agtgagtgtgatgaagatgaaggaaatgagaaggttttaaccactgcacagcagaaagct
cagcgaataatggagtcctttgaaaatccatttagaatgtacctgccttcagaacagaat
cctgcccatgtctcccaatctgccaagtttgacccatcgtccaagatttatgaaatcagc
aatcgatggaagctgatgagtcagacacaagtacagaaggagcccaaggatgaaaccaag
aagaaagcagcccagcagtcagctgctcgtgagcaggcacagaaggcacatgaagaggca
acagaaaacattgtgtctgttcgtcagcaagctatgcaggaacaagctaataagaagagg
gagagaatcatgagtgaaacgggaacagaattgccaaaacaagagaagaaacggccaaaa
gcctctcagcaaccagaggagctggaagctcccaagcagtttaccccctttgattacagc
aagtccaacttcaaagtgtttgcaggaagcagcaaatcgaagcagtcgccacaatttgat
cctgccaagcaagcttacacaggcaagaaatttgctggagccaacaaacttcaacagtct
ggaaacagaagcatgtcctacctggcagggaaggctgaaaggagttccaggcaccactgg
ccaaagagatag
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