Chaetura pelagica (chimney swift): 104395667
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Entry
104395667 CDS
T08631
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104395667 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104395667 (SKIV2L2)
03041 Spliceosome [BR:
cpea03041
]
104395667 (SKIV2L2)
03009 Ribosome biogenesis [BR:
cpea03009
]
104395667 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
cpea03016
]
104395667 (SKIV2L2)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104395667 (SKIV2L2)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104395667 (SKIV2L2)
Spliceosome [BR:
cpea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104395667 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104395667 (SKIV2L2)
Ribosome biogenesis [BR:
cpea03009
]
Eukaryotic type
Pre-60S particles
Helicases
104395667 (SKIV2L2)
Transfer RNA biogenesis [BR:
cpea03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104395667 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104395667
NCBI-ProteinID:
XP_010003699
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MVCGPTAALAGGAHRVGPTCNVISVVRGTKRSEERSSVTAAGKHQREAEVDSTEDAVLGK
RPKVEDVVPEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPRTGKAAKEYPF
ILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQK
YREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMR
DSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQH
YIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIV
KMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKL
PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLF
TSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVVLMVDEKMSPTIGKQLLKGSADP
LNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEAQYNKIAIP
NEENVVIYYKIRQQLAKLAKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFS
KKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLVHLLSA
ISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIKDQGLKKVIQKVE
AFEHRMYSHPLHNDPNLENVYKLCEKKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVL
RRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENS
SEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGAN
FAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggtttgcgggcccacggcggctcttgcgggcggggctcaccgggttgggcccacgtgt
aacgtgatcagtgttgtccgtgggacaaaacgatcagaggaaagatcttcagtaactgca
gctgggaagcaccaaagggaagctgaggtcgatagcacagaagatgctgttctgggaaag
aggccaaaagtggaggatgttgtaccagaagatgctaatctggcagacctgatgcctcaa
gtgaaggtgcaagctgtggagacagtggaaggttgtacacatgaggttgcacttccagca
gatgaagacttcacaggtctgaagccaagaactggaaaagctgcaaaagaatatccattt
attcttgatgcctttcaaagagaagctattctttgtgtagataataatcagtctgtgtta
gtatcggctcatacatcagctggtaaaactgtttgtgcagagtatgcgattgccctggct
ttgagggagaaacagcgtgtgatattcacgagtccaattaaagctttgagtaatcagaag
taccgtgagatgtatgaggaatttcaggatgttggtttgatgactggtgatgtcaccatt
aatcctacagcttcttgtctggtaatgacaacggagattttgagaagtatgctctacaga
ggttctgaggttatgcgagaagttgcatgggtgatttttgatgaaatccattacatgaga
gattcagaacgtggtgtggtttgggaagagacaattattctgctccctgacaatgttcat
tatgtgttcctttctgcaactattccaaatgcccgtcagtttgctgagtggatctgccat
cttcacaaacagccttgccatgtgatttacacagactatcgacccactccgctgcagcac
tatatattcccagcaggaggagatggactccatctggttgttgatgaaaatggagatttc
agagaagacaattttaatacagcaatgcaagtgcttagagatgcaggagatttagcaaaa
ggggaccagaaaggcaggaaaggaggaacaaaaggtccttcaaatgtttttaagattgtg
aagatgataatggaaaggaatttccaacctgtaattattttcagcttcagtaagaaagac
tgcgaagcctatgcacttcagatgacaaagttagatttcaatacagatgaagaaaaaaag
atggttgaagaagttttcaataatgcaattgattgtctgtcagatgaagacaaaaagctt
cctcaggttgagcatgtacttcctctgctgaagcgaggaattggtatccatcatggcggc
ctgcttcctatcttaaaagaaaccatagaaattctgttctctgagggcctaataaaggcc
ttatttgcaacagaaacttttgctatgggaattaatatgccagccaggactgtactattt
acaagtgccagcaaatttgatggaaaagatttccgatggatatcctcaggtgaatacatt
caaatgtcgggtcgtgcaggacgccgaggtatggatgatagaggaatagtagttcttatg
gtggatgaaaaaatgagtccaacaattggcaagcagcttttgaagggttcagctgaccct
ttaaacagtgcattccacctgacatacaacatggtactgaacttgcttcgagtagaggaa
attaaccctgaatacatgttagaaaaatcattctatcagttccaacattacagaactatt
ccagaaatagtagaaagagtgaataatttggaagcacagtacaacaaaatagcaattccc
aatgaagaaaatgtggtcatatactacaaaatccgacagcagcttgcaaagctggctaaa
gagattgaagaatatattcacaaaccaaagtattgcttaccctttctgcagccaggaaga
ctggtaaaggtgaagaatgaaggtgatgactttggatggggagtggttgttaatttctcc
aagaaatcaaatgttaagccaaattctggtgaattggacccattatatgtagtggaagtt
ctactgcactgcagcaaggagagtttgaaaaattctgccactgaggctgcaaagccagcc
aggcctgatgagaagggagagatgcaggttgttcctgttctggtacatctcctctcagcc
atcagcagtgtccgactttacataccaaaagacctgaggcctattgacaacaggcaaagt
gtgttaaaatctatacaggaagtacagaagcgatttcctgatggaataccgttactagac
cctattgatgacatgggcatcaaagatcaaggactgaaaaaagttatccaaaaagtagag
gcatttgagcataggatgtattcacatcctcttcacaatgatcccaacttggaaaacgta
tacaaactctgtgaaaaaaaagcacagattgccatggatattaaggcagcaaagcgagaa
cttaaaaaagccagaactgtcttacaaatggatgaactgaaatgccgcaagcgtgttttg
agaaggctggggtttgccacatcttcagatgtcattgagatgaaaggacgagtggcttgt
gaaatcagcagtgctgatgaactactcctgacagaaatgatgttcaatggtctcttcaat
gacttatctgcagaacaggcaactgcactactaagctgttttgtatttcaagagaattct
agtgaaatgccgaaactgacagagcagttggcaggaccccttcggcagatgcaggagtgt
gcaaaaagaatcgccaaggtgtcagcagaagcaaaactggaaattgatgaagaaaattat
ttaaattctttcagacccaacctaatggatgttgtgtatacatgggcaaatggagctaac
tttgctcacatctgcaaaatgactgatgtctttgaaggtagcataatacgttgcatgaga
aggctggaagaattgcttcggcagatgtgccaggctgcaaaagccattggaaacacagag
ctggaaaacaagtttgcagaggggattacaaaaatcaagagagatattgtgtttgctgca
agcctttacctgtaa
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