Chaetura pelagica (chimney swift): 104396067
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Entry
104396067 CDS
T08631
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpea03016
]
104396067 (RTCB)
Enzymes [BR:
cpea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104396067 (RTCB)
Transfer RNA biogenesis [BR:
cpea03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104396067 (RTCB)
Prokaryotic type
tRNA splicing ligases
104396067 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104396067
NCBI-ProteinID:
XP_010004152
LinkDB
All DBs
Position
Unknown
AA seq
510 aa
AA seq
DB search
MNLNKDAEAVQEVRQSGTAAFDSPSSPVTLEILYLEYCLPTGNCVMRKDIDQSYFQDSLI
LSGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGG
VGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMG
VDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVD
EIYNEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLAC
ARIASAEGQDYLKGMAAAVNYAWVNRSXXXFLTRQAFAKVFNTTPDDLDMHVIYDVSHNI
AKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGT
EQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESY
KNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaacaaagatgcagaagcagtgcaagaagtgaggcaaagtggtactgctgct
tttgatagtccctcttcccctgtgactcttgaaatcctgtacctggagtattgccttcca
actgggaactgtgttatgagaaaggatatagaccaaagttattttcaagacagcctgatt
ctctcaggtgcaggtggctttttgcctgccatgaaacagattgggaatgtggctgcatta
cctggcattgttcatagatccataggccttccagatgtccattctggctatgggtttgcc
attggcaacatggctgcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggc
gtcgggttcgacatcaactgcggggtccgcttgctgcgtacaaatttggatgaaagtgat
gtgcagcctgtgaaggagcagcttgcccaggctatgtttgaccacattcctgtcggtgtt
ggctccaaaggtgtcatccccatgaatgccaaggatttggaagaggcactagagatgggt
gtggactggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaa
tatggaagaatgctgcaggctgatcccaacaaggtctcttcaagggcaaagaagaggggc
ctgcctcagctggggaccctaggagctggaaatcattacgccgagatccaggttgtggat
gaaatttacaatgaatatgctgccaggaagatgggcattgaccacaaagggcaagtgtgt
gtgatgatccacagtggcagcagaggcctgggccaccaggttgccacagacgcactggtg
gcaatggaaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcatgt
gccaggattgcctctgctgagggacaggattacttgaagggaatggcagctgctgtgaac
tatgcatgggtcaaccgctcnnnnnnnncttttctaacaagacaggcctttgccaaagtc
ttcaacacgaccccagatgaccttgatatgcatgttatctatgatgtgtctcacaacatt
gccaaagtggagcaacatgtagtggatggaaaggagcgaactctgctggtgcacagaaag
ggatcaaccagggccttccctcctcaccatcctcttattgctgtcgattatcaactgact
ggacagcctgttttgatcggtgggactatgggtacctgtagctatgttcttactggaaca
gagcaaggcatgactgagaccttcggaactacttgccatggagctggtcgtgcactgtct
cgagccaaatctcgacgtaacttggacttccaggatgtattggacaagctggctgacatg
ggcattgccatccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttat
aagaacgtgacagatgtggttaacacctgccatgcagctggcatcagcaagaaagccatt
aaactgagacctattgctgttataaaaggctag
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