Chaetura pelagica (chimney swift): 104396321
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Entry
104396321 CDS
T08631
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03030
DNA replication
cpea03410
Base excision repair
cpea03420
Nucleotide excision repair
cpea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104396321 (RFC1)
03410 Base excision repair
104396321 (RFC1)
03420 Nucleotide excision repair
104396321 (RFC1)
03430 Mismatch repair
104396321 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpea03032
]
104396321 (RFC1)
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104396321 (RFC1)
DNA replication proteins [BR:
cpea03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104396321 (RFC1)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104396321 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
Rad17
AAA_5
BRCT_2
AAA_16
AAA_30
RuvB_N
AAA_18
RNA_helicase
AAA_17
AAA_33
AAA_7
nSTAND3
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
104396321
NCBI-ProteinID:
XP_010004456
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MAATPGGSDTKQDIRNFFGVVQPGKRQERETVRRSEKIKNGEGPSSGKKREKETKVNSSP
SEDDPKPKRTNKKRRIIYDSDSEEEVQSVKKPKKPSEKKAATSKLGKVLKQDPVVYISET
DEEDDFVNKRISQKPKENGTSAISCPGTTMVKKEDVKPRAKSKPLSPVKKTPTSALDYFG
TSSVQRSEKKLVASKRKEPSQSRDSTIDDEAIARQLQLEEDSELERQLHEDEEFAKTLAM
LDETPQKKKARKDSGGEQAALSSKSSPSVTERYKQSERGKATNSTGEAKNYTAKEQSKSE
HSKGSRSASQSSDGKTARELTDKALPLKPSSKLVSLKQKEDTAEKERGAQSLVSKEKTAS
GKEEKITPKKEKISPKKSESVSPEDSEKKRINYQAYRSFLNREGPKALGSKEIPQGAENC
LEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKRTNYLVMGRDCGQAKCEKASTLG
TKIIDEDGLFDLIRTMPGKKSKYELAAETEAKKIESRPKRTPQKAEAGKTSFSPFKKEAD
NKNNKFTSEKGDTVKSLKRETIVRKLVDFKRQTVDKKEAPKPKEDLVSEINEDGTEKLLW
VDKYKPVSVKAIIGQQGEQSCANKLLRWLRNWHKNTSDDGQAKTSKTGGKDDGSGFKAAL
LSGPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSS
SVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCFD
LRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLT
YDEAKMDASRAKKDIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQENY
VHVRPAAAGGNLKKHFVLLSKAADSICDGDIVDKQIRSKLNWSLLPTQAIYASVLPGELM
RGHMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQP
LQDFGVDGVQEAVKLVDSYCLMREDVENIMEISMWGGKPSPFSKLDPKVKAAFTRAYNKE
AHLTPYSLNSAKTWKRQSASAVTLELNEDLNVEEIQSDEDEQDTVESDAMIKQKKAKSSK
LPKGEKNEETTKKEGKRKEKTRH
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacccctggaggtagtgataccaagcaggatatccggaatttttttggtgtt
gtgcaacctggaaagcggcaagaacgtgagactgtgagaaggagtgaaaaaattaaaaat
ggtgaaggaccatccagtgggaagaagagggaaaaggagactaaggtgaatagttcaccc
agtgaagatgatcctaaaccaaagcgaacaaacaagaaaagaagaataatctacgattca
gattcagaagaggaggtgcagtcagtgaaaaaacccaagaagccatctgagaaaaaagca
gctacttcaaaacttggtaaagttctaaagcaggatcctgttgtgtatatttcagagaca
gatgaagaagatgactttgtcaataaaagaatttcccagaaaccgaaggagaatgggaca
tcagcaatcagttgtccaggaacaactatggtgaaaaaggaggatgtaaaaccacgagct
aagagtaaaccattatctccagtgaaaaagactcccacctcagcacttgattactttggg
acaagtagtgtccaacgctcagaaaagaaactggtagcaagtaaaaggaaggaaccttca
caaagcagagacagcacaatagatgatgaggccattgctaggcaactgcagcttgaagaa
gattcagagctggagaggcagctgcatgaagatgaagagtttgctaaaactttggccatg
ttggatgaaacaccccagaagaaaaaggctcggaaggattcaggaggtgagcaagcagcg
ttgagcagcaagagcagtcctagcgtgacagaacgatacaagcagtcggaaagagggaaa
gcaacaaactcgacaggtgaagcaaagaattacactgcaaaggagcagagtaaatctgaa
cattcaaaagggtctcgttcagcctcacaatcatctgatggtaaaacagcaagagagttg
acggataaggccttgcctttgaaacctagctctaagcttgtgtctctgaaacaaaaagaa
gacaccgctgaaaaggaaagaggtgctcaaagtttagtatcaaaagaaaaaactgcttca
gggaaagaagagaagataacaccaaagaaggagaaaatttctccaaagaagagtgagtct
gtaagccctgaggactctgaaaagaagcgaatcaattaccaagcctaccgaagcttcctc
aatcgcgaggggccaaaagcactgggttccaaagagatacctcagggtgctgaaaactgc
ttggaaggcctgacattcgtcattacaggcgttctggagtgtattgaaagagatgaggcc
aaatccctgattgaacgttatggaggaaaagtaactggcaatgttagcaagaggacaaat
tacctggttatggggcgagattgtggccaagctaaatgtgaaaaggcatcaactttaggg
acaaagattattgatgaggatggtctgtttgatctcattcgaaccatgccaggcaaaaaa
tccaaatacgagctggcggctgaaacagaggcaaagaaaatagagtcaagacctaaaagg
acaccacagaaagctgaagctggaaaaacaagctttagccccttcaaaaaggaagctgat
aataaaaataataaatttacttctgaaaaaggagatactgtcaaatctcttaagagagaa
accatcgttcgaaagcttgtggattttaaacggcaaactgtagacaagaaagaagcccca
aagcccaaggaggacttggtttctgagattaatgaagatggaacagagaaattgctatgg
gtagataaatacaagcctgtatctgttaaggcaataattggacaacaaggtgagcagagc
tgtgccaataaactgctccggtggctacgaaattggcacaagaatacctcggatgatgga
caagcaaagaccagtaaaactggaggcaaagatgatggtagtgggtttaaagcagcatta
ctttctggtccaccaggagttggtaaaactactacagcttctttggtttgtaaggaactg
gggtatagctacgtggagctgaatgccagtgacactcgcagtaagaacagtctaaaggaa
gtggttgctgaatcgcttaacaacaccagcatcaaagacttctgttctggcacatcctca
tcagttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaa
gacagaggagggattcaggagctgattggtttgattagacacacaaagatacccatcatc
tgtatgtgtaatgatagaaaccaccctaaaatgcgttccttggtccactactgttttgat
cttcgttttcagagacctcgtctagaacaaattaagggtgccatgatgtctattgcattt
aaagaaggtttaaaaattccaccacctgctatgcaagagataatcctggcagcaaatcag
gacatcagacaggttttacataatcttaatatgtggtgtgcaaaagataaatctttgact
tatgatgaggctaaaatggatgccagcagagccaaaaaggatatcaaactgggccctttt
gatgttgtccggaaggtttttgctactggagaggaggcttctcgtatgtccctgatagac
aaatcggatcttttcttccatgattattccctagcacctctctttgtccaagagaactat
gtacatgtcagacctgctgctgctggaggaaatctgaaaaagcacttcgtgctcctgagt
aaagcagctgacagtatctgtgatggtgatatagtggacaaacagattcgtagtaagcta
aactggagccttcttccaacacaggctatttatgcaagtgttctccctggagagctgatg
agaggacacatgtcccagtttcctgtctttcccagctggctgggaaaattttcgtctaca
ggcaaacatgatcgtatcattcaagagctggcaatgcacatgagcctcagaactcagaca
tgcaagaggacagtaaacatggagtatttgtcatatttgcgggatgcacttgtccagcct
ctgcaagactttggagtagatggtgtacaagaagctgtaaaattagtggactcctactgc
ttgatgagagaagatgttgaaaatatcatggaaataagcatgtggggaggcaaacccagt
cctttttcaaagctggatcccaaggtcaaagcagcttttacacgtgcctacaacaaagag
gcacatctgactccatattcacttaactctgccaagacctggaaaaggcagtcggcatct
gcagtgaccctagaactgaatgaagacttgaatgtggaagagatccagtctgatgaggat
gagcaagatacagttgaaagtgacgcaatgattaagcaaaaaaaggcaaagtcttctaag
ctgccaaaaggagagaaaaatgaagaaacaacaaagaaagaagggaaaagaaaagagaaa
acaagacattaa
DBGET
integrated database retrieval system
