Chaetura pelagica (chimney swift): 104396330
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Entry
104396330 CDS
T08631
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpea03036
]
104396330
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
104396330
Chromosome and associated proteins [BR:
cpea03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104396330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
CS
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
104396330
NCBI-ProteinID:
XP_010004466
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MEVVVLEIEDPSCFWVIMKGCGPYVVDEIDYKNLNAEMNQFYDKLYKDVDDVKSLTVEEG
QICVVFSEELKCWCRAVIKSVMQCTDHYQIECFLVDYAKYVFVKSNDIRVAPEAFMQIPY
RAKKCRLYRTKPLTLHINFFENSAKMIPAKRWDSAATQYFQNLLKASTEMKAKLCAVEGN
TFDIWLYVSIQDEKVCVNDDLVSKNFAHFEETKENTGSSEDCQENKTSLNLESLPVKIVE
PALAFRPVLFQEKIPPNLETGLAVSSSLLKETWQRLSTDLNENTVSSFQDLREEKKFIFL
SNKIEPWSVLETAPLLDGLKKELTRNKFLGPNFTESYCWPPVARGCDLVAVSYQGDDPFL
YIPPIITILQLGSCYTAFPSRNGPLALILCPGWKKAQLVFDLLKTYEKCSRRLHPMLIIL
GQNKEEARSVNIQGCLVIVTTPYSLLRLFEHHSSLFCRLCHLVLDETEVLFSDAKEQVFT
ILDCYKKRVNIEEREYSPQHIVAVGTHWNKHLVHLIKEFMNDPYIVITAMEEASVYGNVQ
QVVQPCTSSERTAVLLKILDFTHSHLQKVLVFTNSVYEAEMVHKVLKSNSIFSLKIHEES
KYNFKDILEQWTGKYQPGTHVVLVLTDDCVQSLGITDATCVIHFSLPSPGAFGQRLLCMS
DNFCDMIKDSSVDQECAKSVILLPENNACHALGILHYLQHTEAEMPPELHDLIVKMLEAE
EENKCLRPLCTYLKTFGICKNRTVCPDRHKINLQIDVPQNIPDKMIQMPQYVTILPLHIV
NATNYFGRIVDRQKDQYAILAEEMNEYFKQPSNKISVKNVEKLAFYGLCEKTLFHRVQVV
EISQREEENLFFNVEIKYIDEGRTSQVQSYHLLHLPARFQCLPPQAVEFIVCRVKPIDNE
IEWNPEVTSYINKKIKGKLHEAKIIQTLGNTAWVDPMVRVTRLPELKISVNEYDVRSEIL
STGLGTDNPEHKTQLQKLCRNMEISDYAQNMESLSIKEDTAGPENASKPQNMSVPENPTE
NCSSSEITSGNNPCEGIAQAKETEDSTLRQHKCFYPEIKWFQNEETVTVKVGITNTTDCK
YEFSKHKVVFSACSGDKLYLADMELYQDILTEKSTCVIKDKEAVLVLVKEKKGAWCKLLK
SKNPHVSFDFEHWEDFQEKSPFPAGTKKVDYNTAVTPESDDSEDSETESDE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgtggtgttagagattgaagatccaagttgcttttgggttattatgaaagga
tgtgggccttacgttgttgatgaaatagattataaaaacctgaatgctgaaatgaatcag
ttctatgacaaactttataaagatgtggatgacgtaaaatcactaacggtagaagaaggc
cagatttgtgtggttttcagcgaggaactcaaatgctggtgtagagcagttattaagtca
gtgatgcaatgtacagatcattatcaaatagaatgttttcttgtggattatgccaaatat
gtttttgttaaatcaaatgacattcgagttgcaccagaagcatttatgcagatcccatac
agagcaaagaagtgtaggctgtatcgcacaaagccactgacgttgcatatcaactttttt
gaaaattctgcaaaaatgataccagccaaaagatgggacagtgctgctactcaatatttt
caaaaccttctcaaagcaagtactgaaatgaaagccaagttatgtgctgtggaaggtaac
acatttgacatttggctttatgtctcaatacaagatgaaaaggtgtgtgttaatgatgat
cttgtctcaaagaactttgctcattttgaagaaactaaagagaatacagggagttctgaa
gattgtcaggagaacaaaacatcattaaatcttgagtctcttccagtgaaaattgtagaa
cctgcacttgcttttaggccagtgctgtttcaggagaagataccaccaaatcttgaaaca
ggtcttgctgtttccagctccttgctcaaagagacatggcaaaggttaagcacagatcta
aatgaaaatactgtatctagttttcaagatcttagggaagaaaaaaagttcatctttcta
agcaataaaattgagccatggtctgttctggaaacagcaccacttcttgatggtctgaaa
aaggaacttactcggaacaaatttttgggccctaacttcacagaatcttactgttggcca
ccagtagctcgaggatgtgatctagttgctgtctcatatcaaggagatgatccttttcta
tatattccaccaattattacaattttgcagttaggaagctgctacacagcctttccaagc
agaaatggaccactagcacttattttatgtcctgggtggaaaaaggcacaacttgttttt
gacctactgaaaacatatgagaaatgctccagacggcttcatccaatgttgataatactt
ggacagaacaaagaagaagctagaagtgtgaatatccaaggatgtttagtaattgtgact
acaccatatagtctcctgagactgtttgaacatcacagttcattattttgtagactttgc
catcttgttcttgatgagactgaagtactgttctctgatgctaaagaacaggtttttact
atattagattgctacaaaaaacgtgttaatattgaagagcgggaatattcaccacaacac
attgttgctgttggaactcactggaataagcatttagtacacttgataaaggagttcatg
aatgatccttacattgtgataacagctatggaagaagcttctgtctatggaaatgtgcaa
caggttgtgcagccttgtacaagcagtgagagaactgctgtgttactcaaaatactggat
tttacccacagtcatcttcagaaggtgctggtattcactaactcagtatatgaagcagag
atggtccataaggtactgaagagcaattcaatattttccttgaaaatacatgaagaaagc
aaatataacttcaaggatatcttagagcagtggacaggaaagtatcaacctggcactcat
gttgtgttagttttaacagatgactgtgtgcagtctttgggaatcactgatgcaacttgt
gtgatacatttcagtctgccttctccaggagcctttggtcagcgtctgctttgcatgtct
gacaacttctgtgacatgataaaggattcttctgtagatcaggaatgtgccaagtcagtc
attctgctaccagaaaacaatgcatgtcatgcactgggaatcctgcactatttgcagcac
acagaagctgaaatgccaccagagctgcatgatttaattgtcaagatgctagaagctgaa
gaagaaaataaatgtttaaggccactgtgtacctatcttaaaacatttgggatttgcaag
aatagaacagtgtgtccagatcgtcataaaatcaatttacaaatagatgtgccccagaat
ataccagataaaatgatacagatgcctcaatatgtgacaatactgcctctccacattgta
aatgcaacaaactactttggtcgaatagtagatagacaaaaggaccagtatgcaattctt
gctgaagaaatgaatgagtattttaagcaacctagtaataaaatctctgtgaaaaatgtg
gagaagctggcgttttatggactatgtgagaaaacactttttcacagggttcaggtggta
gagatttctcagagagaggaagaaaatttgttctttaatgtcgaaattaaatatatagat
gaaggcagaacaagtcaagttcagagctatcacttgcttcacttacctgcaaggtttcag
tgtctgccacctcaggctgtggaattcatagtctgtagagtgaaacccattgataatgaa
attgaatggaacccagaggtaacctcttatattaataaaaaaattaaaggaaaactccat
gaagcaaaaataatacagaccttgggaaatacagcttgggttgacccaatggtccgggtt
accaggcttccagagctgaagatttctgtcaatgaatacgatgttcgatctgagattttg
tctacgggtctgggaactgacaatccagagcataaaacacaacttcagaagttgtgcaga
aacatggaaatatcagattatgcacagaacatggagtctttaagtataaaggaggataca
gctggtccagagaatgcatccaaaccacagaatatgtctgtaccagaaaatcctaccgaa
aactgcagttcttctgaaattacttctgggaataatccatgtgagggcatagctcaagct
aaggaaacagaagactctacactgcgtcagcataaatgcttttatccagaaataaaatgg
tttcaaaatgaagagactgttacggtgaaggtaggaataacaaatacaactgactgcaaa
tacgagttctctaaacataaagtggttttcagtgcttgttcaggagacaaactttatttg
gctgacatggagctgtatcaagatatacttacagaaaagtctacatgtgtcattaaggat
aaagaggctgttcttgttcttgtgaaagagaaaaaaggagcatggtgcaaactactgaag
agcaagaatcctcatgtgtcttttgattttgaacactgggaagattttcaagagaaaagc
ccatttccagctggcactaaaaaagtggattacaatactgcagtaaccccagaatctgat
gattcagaagacagtgaaacagaaagtgatgagtaa
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