Chaetura pelagica (chimney swift): 104396773 Help Entry 104396773         CDS       T08631                                  Symbol COL11A1 Name (RefSeq) collagen alpha-1(XI) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism cpea  Chaetura pelagica (chimney swift) Pathway cpea04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cpea00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     104396773 (COL11A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cpea00536]     104396773 (COL11A1) Glycosaminoglycan binding proteins [BR:cpea00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104396773 (COL11A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3 Motif Other DBs NCBI-GeneID:  104396773 NCBI-ProteinID:  XP_010004969 LinkDB All DBs Position Unknown AA seq 1804 aa AA seqDB search MEMQRWSPRWKTRRWPWDSAVTVLITFAVLRAAQVRGAEPVDVLKALEFHNSPEGVSRTA GFCTNRRDSKGSDVAYRVSKAAQLSAPTKQLYPGGHFPEDFSILMTVKPKKGIQSFLLSI YNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVTM IVDCNKKTTKPLERSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCEH YSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSLTEGPPLFEETVAQT EANVVDGFQEYSIAENDYGPRTEAPFRTTEANEQNPVEEVFAEEYITGEDYDKKTEETEY GSRGIDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTGHG AYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLP GADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRP GPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGDR GFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGTP GPPGQPGIAGVDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKP GLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK GEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGVP GLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKP GPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPFFL AGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPIGSPGERGAAGTAGPIGLPGRPGPQGP PGPAGEKGGPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGD KGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGL PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGN PGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGE PGPAGQDGVGGEKGEDGDSGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGE PGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGLPGL KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGP PGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMF SDAGDNVLDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEY WIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLS YLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSNDEEM SYDNNPFIKALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPV CFLG NT seq 5415 nt NT seq  +upstreamnt  +downstreamnt atggagatgcagagatggtctccaaggtggaaaacgagaaggtggccctgggactcggct gtaactgtgctcatcaccttcgctgtcctccgggctgcacaagtcagaggagctgaacct gttgatgtgctaaaagcattagaatttcacaattcaccagaaggagtatcaagaacagca ggattttgcacaaaccgaagggattcaaaaggatcagatgttgcctacagagtttcaaaa gctgcacagctgagtgccccaacaaagcagctgtacccaggtggacattttccagaagat ttttcaatattaatgacagtaaaacctaaaaagggtatccagtccttccttctgtctatc tacaatgagcaaggaattcagcaagtaggtgttgaagttggtagatcccctgtcttcctg tttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtcaac attgctgatggcaagtggcatcgagtagctattagtgtggagaaaaaaagtgttacaatg attgttgactgtaacaaaaaaacgacaaaaccacttgaaagaagtgacaaaacagttgtg gacaccaatggcataactgtctttggaaccaggattctggatgaagaagtttttgagggt gagattcagcagctgttgattatagcagaccccagagctgcatatgactattgtgagcat tatagcccagactgtgattccccagtgcccaatgctgctcaggctcaagatcctcaagtt gatgagtacacaccagaagattttatcgagtatgactatgagtatggggatgcagattat aaagaaactgattctctaacagagggaccaccactgtttgaagagacagtagcacaaaca gaggcaaacgttgttgatggatttcaagagtatagcatagctgaaaatgactatggaccc cggacagaagctcccttcagaactactgaagcaaatgagcaaaatcctgttgaagaagtg tttgcagaagaatacataactggagaggattatgataaaaaaactgaggaaactgaatat ggaagcagaggaatagacctcagtgaatctgatctgctggtagatggagacttaggcgaa tatgatttttatgaatataaagaatatgaagagaaaccaactgattctactaatgaggag tttggtccaggtgttcctgcagagactgatatcacagaaacaagcgtgactggacatggg gcttatggagaaaaaggccaaaaaggagaaccagctgtgattgaacctggtatgctcatt gaaggaccacctggaccaagaggacctgctggtcttacaggtcccccaggcctacaaggt cctgttggtcctccaggtgaccctggtgaaaggggtccacctggtcgtcctggtctccct ggtgctgatggcttagcaggtccccccgggaccatgttaatgttgccattccgctttggt ggagatggtgagaagggcccaacaatctcagctcaggaagctcaagcacaagctattctt cagcaagctaggattgctatgagaggtccacctggtcccatgggactcactggaagacca ggacctgtgggtggacctggagcagcaggtgctaagggggaaagtggtgaaccaggtcca cagggtcctcgtggtgttcaaggtgcccctggtccaagtggaaaagctggcaaaagggga cgtcctggagctgatggtgccagaggaatgccaggagaacctggtgcaaagggtgacaga ggatttgatggtcttcctggcctccctggtgacaaaggtaacaggggagaccgtggccca cagggacctcctggcttacctggtgaagatggatcaagaggagaagatggagaagttgga ccaagaggtctcccaggtgaagctggtccacggggattactgggccccagagggacacct ggtccccctggacaaccaggcattgcaggtgtcgatggaccttcaggccccaaaggaaat atgggtcctcaaggggaaccaggacctcctggtcagcaaggaatcccaggcccacaagga cttcctggtccacaaggtcctattggacctcctggtgaaaagggacctcaaggcaagcct ggccttcctggccttcctggttctgatgggcctcctggtcatcctggcaaagaaggtcag tcaggagataaaggtgcattggggcctccaggtcctcagggtcccattggctatccaggt ccccgtggtgtaaagggagctgatggtgtccgtggtctcaagggatccaaaggtgaaaag ggtgaagatggttttccaggatttaaaggtgacatgggtcttaaaggtgaccggggagaa gttggtcagccaggtccacgaggagaagatggcccagaaggtcctaaaggtcgagcaggt ccttctggggacccaggtgctgctggcccagctggggaaaagggtaagcttggtgtaccc gggttgccaggatatccaggaagacaaggtccaaagggctcaactggtttcccaggattc ccaggtgccaatggagagaaaggtgcaaggggattacatggcaaaccaggccctagagga cagcgaggaccaacaggtccaagaggttcaagaggtcccagaggtcccactggcaaacct ggtccaaagggtacttcaggcaatgatggtcctcctggcccgccaggtgaaaggggacca caagggcctcagggacctgttggattccccggaccaaagggacctccggggccacctgga aaagacggcttgcctgggcatccagggcagcggggggagactggttttcaaggaaaaact ggtcctcctggtcctggaggtgttgttggccctcagggtcctactggtgagactggccca attggtgaaagaggtcatccaggtcctcctggcccaccaggtgaacaaggtctcccaggt gctgcaggaaaagaaggtgctaagggtgacccaggccctcaaggcattccttttttttta gcaggtcttcgtggtttccctggagagagaggccttccaggtgctcagggcccagctggt ctgaaaggaggggaaggcccacaaggcccacctggcccaattggctcaccaggggaacgt ggagcagcaggcactgctggcccaattggtctaccaggtcgtcctggacctcagggtcct ccaggccccgcaggggagaagggtggtcccggtgaaaaaggtcctcaaggtccagctgga cgtgatggagtacagggtcctgtaggacttcctggtcctgctggtcccagtggttctccc ggagaagatggtgacaagggtgaaattggtgaacctggtcagaaaggcagtaaaggtgac aagggagaaaacggtcctccaggtccaccaggtctccagggtcctgttggtgcccctggt atagctggaggtgatggggaaccaggaccaagaggtcagcaagggatgtttgggcaaaaa ggtgatgaaggtcctcgaggcttccctgggcctcctggccctattggcttacagggtctg cctggcccaccaggtgaaaagggtgaaaatggtgatgtaggcccaatgggtccacctggt cctccaggtccaagaggtccccagggtcctaatggagctgatggtcctcaaggccctcca ggctcaattggctctgttggaggtgttggtgaaaagggtgaacctggagaagctggtaac cctggacctcctggagaatctggaacatctggtccaaaaggtgaaagaggagagaaaggt gaggctggtccacctggagcagctggaccaccaggtgcaaaaggacctccaggtgatgat gggcctaaaggtaacccaggcccagttggttttcctggagatcctggtccccctggggaa cctggtccagctggtcaagatggtgttggtggagagaagggtgaagatggtgattctggt caacctggtccaccaggtccttcaggtgaagctggcccacctggtccacctggaaaaaga ggacctcctggagcaactggtgctgaaggcagacaaggtgaaaaaggtgcaaagggtgaa cctggtgcagagggggctcctggaaaaacaggtccagttggtccacagggacctgctgga aaacctggcccagagggtctccggggcattccaggcccagtgggagaacaaggtctgcct ggagcaccaggtcaggatggccctcctgggcctctgggtccacctggcttgcctggtctg aaaggagacccaggttccaaaggagagaagggacatcctggtttgattggcttgattggc cctccaggagaacaaggtgaaaagggtgataggggtctacctggcccacagggatctcct ggagccaagggtgatgcaggaatttcaggtcctgctggtccacttgggccccctggtcct cctggtttacctggtccccaaggtccaaaaggttccaaaggatccagtggtcctgctggt caaaagggtgacagtgggttacctggtccacctggtcctccaggtcctccaggtgaggtc atccagccgctgccaatccagtcacccaaaaaaacaagaagatctcccgattacatgttc tctgatgctggtgataatgtcctggattattctgacggcatggaagagatctttggttca ttgaattcactgaagcaagacattgagcatatgaagtatccaatgggcactcagaataat ccagcccgaacgtgcaaagacctgcagctctgccacccagacttcccagatggtgaatat tggattgatcctaaccagggctgttctggagactccttcaaagtatactgcaatttcaca gcaggtggggaaacttgcatctacccagataagaaatctgaaggagttagaatttcatca tggccaaaggagaatccaggatcttggtttagtgaatttaagcgaggcaaacttctttcc tatttggatgttgaaggcaattccattaacatggtccaaatgacattccttaaactactg agtgcctctgccagacaaaatttcacttacaactgtcatcagtctgtagcttggcatgat gcatcctctgacagctacgacaaagcactaaggttcttaggatccaatgacgaagaaatg tcttacgacaacaatcctttcatcaaagctcttcatgacggctgtgcatcaagaaagggc tatgcaaagacagtgattgaaatcaacacacccaaaatagaccaagtgcctatagttgat gtcatgatcaatgactttggtgatcagaaccagaagttcggatttgaggttggtcctgtt tgcttccttggttaa

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