Chaetura pelagica (chimney swift): 104396867
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Entry
104396867 CDS
T08631
Symbol
ABCA4
Name
(RefSeq) retinal-specific ATP-binding cassette transporter
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
104396867 (ABCA4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cpea02000
]
104396867 (ABCA4)
Transporters [BR:
cpea02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
104396867 (ABCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
SRP54
Motif
Other DBs
NCBI-GeneID:
104396867
NCBI-ProteinID:
XP_010005069
LinkDB
All DBs
Position
Unknown
AA seq
2334 aa
AA seq
DB search
MSFFSQVRLLLWKNWILRKRQKLRFLVELLWPLSLFLALVWLRKANPVYRQHECHFPNKA
MPSAGTLPWLHGIFCNMNNPCFRSPTPGEGPGVVSNYKNSILARVYKDAQELLLEAPEVR
DLGRIWEDLIIMTQFMETMRTNPERIAGRGIRILDILKDGETLTSFLLEDVGLPDVVVFQ
LINAQVRPEQFAYGVPNLTLKDIACSQMLLDRFIIFSSRRGLTSVHKAMCALSQESLQRV
EDALYANVDFFKLFQLLPSVLDRNSPGADLKAWRRVLSNVSQAVQKLTRKTSVQDLLMVL
QPFVQDGRPESLGQLMSSLSDLFCGYPEGGGSRVLSFNWYEDNNYKVFLGIDSARQKSTY
HYDNTTTPFCNTVIQNLESNPLTKIAWTAVKPLLMGKILFAPDSPSVRQIIKNANSTFEE
LERLRLLTKAWEEVGPQLWYFFQNSLQMNMIRDSLKHPTVRDFLNSQLGAEGLRAEHIIN
FLHNGSPESREKGMADFDWRNIFRAADQALRVLSQYLECLALDKFEGYLNESQLTRKALH
LLEENKFWAGVVFPDIEPTSRSLPPYVKYKIRMDIDAVEKTNKIKDRYWDPGPRADPVDD
LRYIWGGFAYLQDMIEHGIIKTQTKTEVPLGIYLQQMPYPCFVDDVFMITLNRAFPIFMV
LAWIYSVSMTVKSIVLEKEMRLKEAMKNRGITNGVIWCTWFLDSFTMMAVSTFLLTALIM
YGQILHYSSPLLLFLFLLMFTTATIMQCFLFSTFFSKANLAAACSGVIYFTLYLPHIFFF
VWQDRLTVNLKILASLLSQVAFGFGTEYLSRYEEQGLGLQWGNIRTSPLQGDEYSFLLSI
KMMLFDAFLYGILSWYLDNVFPGDYGLPQPWYFPVQESYWLGSRNPKAEKTATAAEKSPE
SEGCVDQKAVEGENNESKTKKYEEPEKPEEKNDNQGKKDGKHKQCKHKREKEPGEQGKPR
TDVQDKDEININTFFEPEPMGLIPGVCIQNLVKIFANRPKPAVDGMNITFYEGQITAFLG
HNGAGKTTTMSILTGLFPPTSGTVLIGGLDIQTHMDSIRHRLGMCPQYNILFNHLTVAEH
ILFYSQLKGRSRDEAEQEMEAMLEDTGLTHKRNEEAQNLSGGMQRKLSVAIAFVGEAKVV
VLDEPTSGVDPYSRRSIWDLLLKYRSGRTIILSTHHMDEADMLGDRVAIISQGKLFCSGS
PVFLKNCFGSGFYLTLVRKMKNSSVARAASLCSCGPQCSCSCSSCTQRDKEGAPEQELDG
NLNELAEVVHHHIPEAKLIESIGQELVYLLPNKNFKQRSYASLFRELEETLDDLGLSSFG
VSDTPLEEVFLKVTAEADPEMQKAGEIQENGSTLDKTANQNKPAEQTALNTNHTSRMPVD
MAGDQNEGKGSRQYKGFELVHQQIKALLIKRFQHASRSHKDFLAQIVLPASFVLLSLILT
VSIPPFGEYPALTLHPWIYGQQFTFFSNERPGSEQMVSLTDALLNKPGFGNRCMKNQPLP
KNYLCNNIPTAWNTPAVHPNLSSFLLTQKWSPENPSPSCKCSSQKKLTMLPECPAGAGGL
PPPQRVQHSTEILQDLTHRNISDFLVKTYPTLIKGSLKSKYWVNEQRYGGISIGGKLPVL
HVSGDQVVNFFSDLGRMMNLTGGQTSLAAAKEMSNFLKYMETEDNIKVWFNNKGWHAMVS
FLNVANNAILRANLKAGQGPEEYGITAVNHPLNLTKEQLSEVTVLTTSVDAVVAICVIFA
MSFIPASFVLYLIQERVTKAKHLQFVSGVSPVIYWLTNFMWDIVNYALSAGMVVLIFAGF
NKKAYTSPTNLPVLVALLLLYGWAVIPMMYPASSFFSVPSTAYVALSCINLFVGINSSAI
TFILELFENNPSLIRFNKTLKNVLIVLPHFCLGRGLIDLAMNQAVTEVYARFGEEHVSNP
FQWDFVGKNLFAMAVQGFAYFILNLLIQHRLFSTKWLAETAMLPIVDEDEDVAEERKRIL
SGGNKTDILELQELTKIYAGRRKPAVDRLCVGIRPGECFGLLGVNGAGKTTTFKMLTGDT
EVTSGDAIVAGNSILTHISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEVKR
VAEWGIQKLGLPMYADHLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQSRRLL
WNSIVSVLRDGRAVVLTSHSMEECEALCTRLAIMVKGTFKCLGTIQQLKCKFGDGYIVTL
KIKAPKPXXXXXXXPAEQFIHMHFPGSLQREKHYNMLQYQICSSSLAKIFRLIISNKEKL
HIEEYSVSQTTLDQVFVNFAKQQIEDEEIPLHPRAAGANQEAKVSPAFHQQTAA
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atgagcttctttagtcaagttagacttctactctggaagaactggatcctccggaaaaga
caaaagcttcgttttctggtggagctcttatggcctctgtcattatttcttgcccttgtc
tggctgaggaaagctaatccagtgtatcgccagcatgaatgtcacttcccaaacaaggca
atgccatctgcaggaacactgccgtggttacatggtatcttctgcaacatgaacaacccc
tgtttccgcagcccaacccctggagagggtccaggtgttgtgtccaactacaaaaattcc
atccttgcaagggtatataaagatgctcaggagctcttactggaagcccctgaagtccgt
gaccttggcagaatctgggaagacctgataattatgactcagtttatggaaacaatgaga
actaatcctgaaagaattgcaggaagaggaatacgaatcctagacattttgaaagatggg
gaaaccctcacttccttcttgctggaagatgttggcctcccagatgttgttgttttccag
ctcattaatgctcaagtgcgccctgaacagtttgcctacggtgtccctaacttgactctg
aaggacattgcttgcagtcagatgctcctcgaccgttttattatcttcagcagcagaaga
ggtctaacatctgtgcacaaggccatgtgtgccttgtcccaggaaagcctacagagagtg
gaagatgccttgtatgcaaatgttgatttctttaagctatttcagctgcttcccagtgtg
ttggacagaaactcaccaggtgctgacctgaaggcctggaggagggtgctgtctaatgtc
tcccaagcagtacaaaagctaaccaggaagacaagtgttcaggaccttttgatggttctg
caaccatttgtacaagatggaaggccagaatccttaggtcagttgatgagctccctgtct
gatcttttctgtggctacccagaaggaggtggatccagagttctttccttcaactggtat
gaagataataactacaaagttttcctggggattgactcagcaagacagaaatccacttac
cattatgataatacaaccacacccttttgtaacacagtgatccagaacttggaatcaaac
cctttaaccaaaatagcttggactgctgtgaagcccctgctgatgggaaaaatcctcttt
gctcccgattcaccttctgtacggcaaatcataaaaaatgcaaactccacttttgaagaa
cttgaacgcctgagacttctgaccaaagcttgggaagaagtaggaccccagctgtggtac
ttctttcaaaacagcctgcaaatgaatatgatacgtgactctctgaagcaccctacagtg
agggacttcttgaacagtcaactgggtgctgaaggcttaagagctgaacatataatcaac
tttcttcacaatgggtctccagagagccgggagaagggaatggcagactttgattggcgg
aacatcttcagagctgcagaccaggctctgcgtgtgctcagtcagtatctggagtgcttg
gccttggataaatttgaaggttatcttaatgaaagtcagctgactcgtaaagcccttcat
ctgctggaggaaaacaaattctgggctggtgtggtttttccagatatagaacctacaagc
aggagtcttccaccatacgtgaaatacaagatccggatggacatagatgcagtggagaaa
acaaacaaaatcaaagacaggtactgggatcctggtccaagagctgatcctgtggatgat
ttacgttatatctggggaggctttgcatatctccaagacatgattgagcatgggattata
aagacccagaccaaaactgaagtgccattaggaatttatctgcagcaaatgccatatcca
tgttttgtggatgatgtcttcatgatcaccttaaatcgcgcctttcccattttcatggtg
cttgcttggatatattctgtttccatgactgtgaagagtattgtgctggagaaggagatg
cgtctgaaagaggctatgaagaacaggggcataactaatggagtgatttggtgcacttgg
ttcctagacagcttcaccatgatggctgtgagcacgttcctcctcacagcactgatcatg
tatgggcaaatactacattatagcagcccacttctcctctttctattcctactgatgttc
accacagctaccataatgcagtgtttcttgttcagcaccttcttctccaaagcaaatctg
gcagctgcctgcagtggagtcatctacttcaccttgtacctgccccacattttcttcttt
gtctggcaagaccgcttgactgttaatctgaagatcctagcaagtttgctttctcaggta
gcttttggtttcggtacagaatacttgtcacgctatgaagagcaaggtcttggcctacag
tgggggaacatcagaaccagtcccttgcaaggagatgaatatagctttcttctttccatt
aaaatgatgctttttgatgcttttctctatggaatactttcttggtatcttgataatgtt
tttccaggggactatgggctaccacagccttggtatttccctgtgcaggaatcttactgg
cttggctctagaaacccaaaagctgagaaaacagcaaccgctgctgaaaaaagtccagag
tcagaaggctgtgtggatcagaaggccgtggaaggggaaaataatgaaagcaaaaccaag
aaatatgaagaacctgaaaagccagaagaaaagaatgacaatcagggaaagaaggatggt
aaacacaaacaatgtaaacacaaacgagaaaaagaacctggcgaacaggggaagcctaga
acagatgtccaggacaaagacgaaattaatataaatactttctttgagcctgagccaatg
ggattgattccaggagtatgcattcagaacctggtgaagatttttgccaacaggcccaag
ccagcagtagatggaatgaatatcactttttatgagggccagatcactgcttttcttggt
cacaatggagcaggaaagacgactaccatgtcgatactgacaggcctcttcccacccacc
tctggaactgtgctgattggtggcctggatattcagactcacatggactccattcggcac
agattagggatgtgccctcagtacaacatcttatttaatcaccttactgtagcagagcat
atcttgttttattctcaactgaaggggagatcgagggatgaagctgagcaagagatggaa
gcaatgctagaagatacaggcctcacccataaaaggaatgaagaggctcaaaatttgtca
ggtggaatgcaaagaaagctgtcagtagccattgcttttgtgggtgaagcaaaagtggta
gtcttggatgagcccacttctggagttgatccatactccaggcgatctatctgggatctt
ctactgaagtatcgctcaggcagaaccatcattctctcaacccatcacatggatgaggca
gacatgcttggagacagagtagccatcatatcccaaggaaaactcttctgctcaggctct
cctgtattcctgaagaactgctttggatctggcttctatctcactcttgttcgcaagatg
aaaaacagcagcgttgcaagggctgcatcactttgtagctgtggacctcaatgctcctgc
tcctgctccagctgtacgcagagggacaaagaaggagctccagagcaggaactggatgga
aatctgaacgagctagcagaagtagttcatcatcatatcccagaagcaaaattaattgaa
agcattggtcaggaacttgtttaccttttgcccaataaaaactttaagcagcgatcttat
gccagtctcttcagagaactggaggaaaccttggatgacctgggactcagcagttttgga
gtttcagatacaccacttgaagaggttttcctaaaggtcacagcagaagctgaccctgaa
atgcaaaaagcaggagagattcaagaaaatggttctactcttgacaaaactgctaatcaa
aacaaaccagctgaacaaaccgcactgaataccaatcacacttctcgaatgccagtagac
atggcaggagatcaaaatgaaggcaaagggtcccggcagtataaaggttttgagcttgta
catcagcagatcaaagcactgctcatcaaacgcttccagcatgcctcccgcagccacaag
gacttcctagctcagattgttctccctgctagttttgtgttgctgtctttaatacttaca
gttagtattcctccatttggagaatatcctgccttaaccttgcacccctggatctatgga
caacagtttacttttttcagcaatgaacgtcctggcagtgagcagatggtctccctcact
gatgctttgctgaataagccaggatttggaaatcgctgcatgaagaatcagcctcttccc
aagaactacctgtgcaataatataccaactgcctggaacacacctgctgttcatcctaac
ctaagcagctttctcctgacccagaagtggagcccagagaatccttcgccctcctgcaag
tgcagcagtcagaagaaactcacgatgttgccagagtgccctgcaggagcaggaggcctc
ccgccaccacagagagtgcagcacagcacagaaattcttcaagatctgacccacagaaat
atttcagattttctggtgaaaacatatcccactttgataaaagggagcttgaagagcaaa
tactgggtcaatgagcaaagatatggaggaatttctataggaggaaagcttccagtcctt
catgtttctggagatcaagttgtcaatttttttagtgatcttggccgaatgatgaactta
acaggaggacaaacttcactggctgctgctaaagaaatgtctaatttccttaaatacatg
gaaactgaagataatattaaggtgtggtttaacaacaaaggctggcatgctatggttagt
ttccttaatgtagcaaataatgcaatccttagagctaatctgaaggctggccaaggccct
gaggaatatgggatcactgctgtaaaccatcctctgaacctcactaaggagcaactctct
gaagtcactgtgctgaccacttcagtggatgctgttgttgccatctgcgtgatttttgcc
atgtcctttataccagccagttttgttttgtacctgattcaagaacgtgtaacaaaagcc
aagcatctacagtttgtcagtggtgtgagccctgtgatctactggctaactaatttcatg
tgggacatagtgaattatgcgctgagtgctggaatggttgtgctcatatttgctggattc
aacaagaaagcgtacacttctccgactaacctccctgtgcttgttgccttgctgcttctg
tatgggtgggcagtaatacccatgatgtaccctgcttcttctttcttcagtgttcctagc
actgcttatgttgcattgtcttgcattaatctctttgtggggatcaacagcagtgccatt
acattcatcctggagttatttgaaaataacccatctttgataaggtttaataaaacattg
aaaaatgtgctgattgtcctcccacatttttgcctgggccgtggactcattgacttggct
atgaaccaagctgtgactgaagtatatgccaggtttggtgaggagcatgtttccaatcct
tttcagtgggactttgttggaaagaacctgtttgccatggctgttcaagggtttgcatac
ttcattttgaatctcctcatacagcatcgtttgttctccacaaaatggcttgctgaaact
gccatgttacctattgttgatgaagatgaggacgttgcagaagaaagaaaaagaattttg
agtggaggaaacaaaacagatatcttagaattacaagaattgaccaagatttatgctggt
aggcggaagcctgcagtggacagactctgtgttggcatccgtcccggagagtgctttggc
cttttgggagtgaatggtgctggcaaaacaacaacattcaaaatgctgactggagatact
gaagtgacatctggagatgctatagtggctggcaatagtatattgacccacatttctgat
gtccatcaaaacatgggatactgccctcagtttgatgccattgatgacctgctcacagga
cgagaacatctctacctatacgcacgcctgcggggggttccagcagaggaagtcaagagg
gtcgccgaatggggcatccagaagctgggacttcctatgtatgcagaccacctggctggt
acctacagtggtggcaacaagcgcaagctctccactgccattgcactgataggctgccca
ccacttgtcttgctggatgaaccaactactggaatggatcctcagtcccggcgcctcctg
tggaactccatcgtcagcgtcctcagagatgggcgagctgtggttctaacctcacatagt
atggaagaatgtgaggccctctgcactcgtttagccatcatggtaaaaggtaccttcaaa
tgcctgggcacgattcagcagctaaaatgcaagtttggagatggctacattgtcactctg
aaaatcaaagctccaaagccnnnnnnnnnnnnnnnnnnnnnncctgctgagcaattcata
cacatgcacttcccagggagtttgcagcgagagaaacactacaacatgctgcagtatcag
atttgctcctcctctctggctaagatttttcggttaataatctccaataaggaaaaattg
catattgaagaatactctgtgtctcaaacaactttagatcaggtttttgtgaactttgct
aaacagcagattgaggatgaggaaattcctttgcatccccgtgcagctggagccaaccaa
gaagcaaaggtgtcccctgcttttcatcagcagacagctgcatag
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integrated database retrieval system
