Chaetura pelagica (chimney swift): 104396871
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Entry
104396871 CDS
T08631
Name
(RefSeq) uncharacterized protein LOC104396871
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03013
Nucleocytoplasmic transport
cpea03015
mRNA surveillance pathway
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104396871
09122 Translation
03013 Nucleocytoplasmic transport
104396871
03015 mRNA surveillance pathway
104396871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104396871
03041 Spliceosome [BR:
cpea03041
]
104396871
03009 Ribosome biogenesis [BR:
cpea03009
]
104396871
03012 Translation factors [BR:
cpea03012
]
104396871
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104396871
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104396871
mRNA cycle factors
Stress granule specific factors
104396871
Spliceosome [BR:
cpea03041
]
Complex C
Other components
EJC/TREX
104396871
Ribosome biogenesis [BR:
cpea03009
]
Eukaryotic type
90S particles
Helicases
104396871
Translation factors [BR:
cpea03012
]
Eukaryotic type
Initiation factors
eIF-4
104396871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104396871
NCBI-ProteinID:
XP_010005072
LinkDB
All DBs
Position
Unknown
AA seq
420 aa
AA seq
DB search
MSPLVWRCRQTPAGGSACLAESIQPPSAKVYIVRQKKVTMMLNLLLSKGSEWDRGARAQG
LTLLQATVNVSLAWKLDEKTPRGSAGFRKVLCSVHAGCGVTPVQRPCCRFCHVGSDVEKD
SSLPFPLAILAVGTAEDIARVTAPLRGLVYLTLGTQGNWDEARPPRKKTPLSPCALCGRQ
LCCPNPAVAPLAQPAAPLQPRHRDSNLHATPERKGHQGRLTEDKDWCSRGAAAAHAGAWA
VLGAVMFPQPQSDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVD
WLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVCARGLDVPQVSLIIN
YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQVDEMPMNVADLI
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgagcccattggtgtggcggtgcaggcaaactccagctggaggaagtgcctgcttggct
gagagcatacagcccccttctgcaaaggtgtatatcgtcaggcagaagaaggtcacaatg
atgttaaatttgctgctaagcaaaggatcagagtgggacagaggagccagggcccagggg
ctcaccctcctgcaggctacagtcaacgtgtcccttgcgtggaagctggatgaaaagacg
cctcgtggttctgctggcttcaggaaggtgctgtgctccgtgcatgcagggtgtggggtc
acgccagtgcaacggccgtgctgcaggttttgtcatgttggcagcgacgtggagaaagac
agcagcctgcccttccctctagccatcctggcagtgggcaccgctgaagatattgcccgt
gtcactgctccactgaggggattggtgtacctgacactgggaacacaaggtaactgggat
gaagccaggcctccaagaaaaaaaactcctctctctccctgtgcactgtgcgggcggcag
ctctgctgccccaaccccgcggtggctcctctcgctcagcccgcagcgccgctgcagccc
cggcaccgggattcaaaccttcatgcaacaccagagagaaaaggacatcaggggagatta
acagaggataaggactggtgctcccgaggcgctgctgcagcccacgccggggcctgggcc
gttctaggagccgtgatgtttcctcagccacaaagtgatgagttgaccctcgaaggcatc
aagcagtttttcgtggctgtggagagggaagagtggaagtttgacaccttgtgcgatctc
tacgacacactcacaatcacccaggctgtcatcttctgtaacaccaagaggaaggtggac
tggctcacagagaagatgagagaagccaacttcaccgtttcatccatgcatggggacatg
ccacagaaggagagagagtccattatgaaagagttcagatctggtgcaagcagagtcctt
atttcgacagatgtttgtgctagaggcctggatgtgcctcaggtgtccctgatcattaac
tacgacttgcccaacaacagagaactctacatacacagaattggccggtcaggcagatac
ggccgaaaaggtgtagcgatcaactttgtgaagaacgatgacatccgcatcctgcgggac
attgagcagtactactccacccaggtcgatgagatgcccatgaatgttgctgatctcatc
tga
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