Chaetura pelagica (chimney swift): 104397257
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Entry
104397257 CDS
T08631
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpea03021
]
104397257 (CHD1)
03036 Chromosome and associated proteins [BR:
cpea03036
]
104397257 (CHD1)
Transcription machinery [BR:
cpea03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104397257 (CHD1)
Chromosome and associated proteins [BR:
cpea03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
104397257 (CHD1)
SLIK complex
104397257 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
CHDCT2
Motif
Other DBs
NCBI-GeneID:
104397257
NCBI-ProteinID:
XP_010005508
LinkDB
All DBs
Position
Unknown
AA seq
1575 aa
AA seq
DB search
MSASESVSGTGSDSESEEDGEKSSCEESESDYEPKNKVKSRKPPGRIKPKSGKKSAGLKK
RQLDSSEDEEEEDDDDYDKRGSRRQATVNVSYKEAEETKTDSDDLLEICGEDVPQTEEDE
FETIEKFMDSRVGRKGATGAATTIYAVEADGDPNADFEKTKEPGEIQYLIKWKGWSHIHN
TWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQI
VERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEYLSRNQSKTTP
FKDCKVLKQRPRFIALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGL
GKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNM
IRTHEWMHLQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTL
IDFRSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKEL
EPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLN
IMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIF
SQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLG
INLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKM
VLDHLVIQRMDTTGKTILHTGSTPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEM
DIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSRNWEEIIPEV
QRRRIEEEERQKELEEIYMLPRMRNCAKQMSFNGSEGRRSRSRRYSGSDSDSISERKRPK
KRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAVARDAELVDKSETDLRRLGE
LVHNGCIKALKDNSSGQERTGGRLGKVKGPTFRISGVQVNAKLVISHEEELAPLHKSXXX
XXDPEGRKKYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTQKI
LPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNSKRRKTRTKKNKVTKAAK
AKEEIKSDSSPQPSEKSDEDDDEDNKANEIKSENKEKAKKIPLLDTPVHITATSEPVPIS
EESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLK
EYTNPELIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQECQQHNDQNISSNVNMHV
IRNPDVERLKENTNHDDSSRDSYSSDRHFSQYHDHHKDRHQGDAYKKNDSRKRPYSAFSN
GKDHRDWDHYKQDSRYYSDSKHRKLDDYRSRDHRSNLEGSLKDIRAHTDHRSHSDHRIHS
DHRSTSEYSHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFELSS
DHKSTPEHTWSSRKT
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatcagagtcagtatcaggaactggttctgattctgagtcagaggaagatggg
gagaaaagcagttgtgaggagagtgaatctgactatgagccaaaaaacaaggtcaaaagc
cggaaacctccaggcagaattaagccaaaaagtgggaaaaagagtgcaggactgaaaaaa
aggcaacttgattcttcagaggatgaggaggaagaggatgatgatgattatgataagaga
ggatctcgtcggcaggcaactgtcaatgttagctacaaagaagctgaagaaaccaaaaca
gattctgatgatttgctggaaatttgtggagaagatgtcccccaaacggaagaagatgaa
tttgaaactatagagaagttcatggatagtcgagttggccgaaaaggagccacaggtgct
gcaaccaccatctatgcagttgaggcagatggtgatcccaatgctgattttgaaaagaca
aaggagccaggagaaatacagtatcttattaaatggaaaggttggtcacacatccataac
acttgggaaactgaggaaacactgaagcaacaaaatgttaaaggaatgaagaaactggac
aactataagaaaaaggatcaggaaacaaaacgatggctgaaaaatgcctctccagaagat
gtggaatattacaactgccaacaggagctgacagatgatctacataaacagtatcagata
gtggaaagaataattgctcattcaaatcagaaatcagcagctggttatccagactactat
tgtaaatggcagggtctgccttactcagaatgtagctgggaagatggtgctctcattgcg
aaaaagtttcaggcacgcattgatgaatacttgagcagaaatcaatccaagaccactccc
tttaaggattgcaaggttttaaaacagaggccaaggtttattgcactaaagaagcaacca
tcttacattggaggacacgaaggcttagagttaagagattatcagttaaatggattgaat
tggcttgctcactcatggtgcaaaggaaatagctgtattcttgcagatgaaatgggtctg
ggcaaaacaatacaaacaatttcttttctgaactacctatttcatgaacatcaattgtat
gggcctttcttgctcgttgtgccactttctaccctgacatcttggcagagagagattcaa
acttgggctcctcaaatgaatgctgtagtttacttaggtgatataactagcagaaacatg
attagaactcatgaatggatgcatctacagaccaaacgattgaaatttaacatacttcta
acaacatatgaaattttgctgaaggataagtcattccttggtggtctgaattgggcgttc
ataggagttgatgaagctcatcgtttgaaaaatgacgactctcttctgtacaagacctta
atagacttcaggtctaaccatcgtcttcttattactggaacccctctccaaaactccctc
aaagagctttggtctttgttgcacttcatcatgccagaaaagttttcctcctgggaagat
tttgaagaggagcatggcaaagggagagagtatggttatgcaagtcttcacaaagaactt
gagccgtttctgctaagaagagtcaaaaaagatgtagaaaaatccttacctgctaaagtt
gagcaaattctgaggatggaaatgagtgcattacagaagcaatattacaagtggatttta
accaggaattataaagctctcagtaaaggttcaaaaggcagtacctcaggctttttgaac
atcatgatggaacttaagaagtgctgtaaccattgctacctcattaaaccaccagatgat
aatgaattctataataaacaggaggccttgcagcatttaatacgtagcagtgggaaacta
atccttcttgacaagctgctaattcgtctgcgagaacgtggcaacagagttctgattttc
tcacagatggtgagaatgctggacatcctagcagaatatctgaagtatcgtcaatttccc
tttcagagacttgatggatcaataaaaggagaattgaggaaacaagcactggatcatttt
aatgcagaaggatcagaggacttctgctttttactgtctaccagagctggagggttaggt
atcaacttggcatcggcggacactgtagttatatttgattctgactggaatccacagaat
gatctgcaagcacaagctagagcgcataggattggacagaagaaacaggttaatatttat
cggctagtcacaaaaggatcagtagaagaagatattcttgaaagagccaagaaaaagatg
gtattagatcatttagtaattcagagaatggacactacagggaaaaccatactacataca
ggctctactccttcaagctcgacaccttttaataaggaggagttatcagcaattttgaag
tttggtgctgaggaactttttaaagagcctgaaggggaagaacaggagccccaggaaatg
gatatagatgaaatcttgaaaagggctgaaactcgggaaaatgagccgggtccgttaact
gtaggagatgagttgctatcacagttcaaggtggccaacttttccaatatggatgaagat
gatattgagttggaaccagaaagaaattcaagaaattgggaagagatcattccagaagtc
cagcggcgaagaatagaagaggaagaaagacaaaaagaacttgaagaaatatacatgctc
ccaaggatgagaaactgtgcaaaacagatgagctttaatggaagtgaagggagacgcagc
aggagcagaaggtactctggatctgatagtgactccatctcagaaagaaaacggccaaaa
aaacggggaagaccacgaacaattccacgggaaaatattaaaggatttagtgatgcagag
atcaggaggtttatcaagagttacaagaaatttggtggccctcttgaaaggttagatgct
gtagctagggatgctgagctagttgataaatcagagacagatcttagacgtttgggagag
cttgtacataacggatgcattaaagctttaaaggacaattcatctggacaagaaagaaca
ggaggtagacttgggaaagttaaaggcccaacattccgaatttcaggagtgcaggtgaat
gcaaagctagtcatctctcatgaagaagagttggcaccattgcacaaatccnnnnnnnnn
nnnnctgatccagaaggaaggaaaaaatatgtcatcccatgccacaccaaggctgctcat
tttgatatagactggggtaaggaagatgattccaatctgttaataggcatctatgaatat
ggttatggcagctgggaaatgataaaaatggatcctgatcttagtttgacacagaagatt
ttgcctgatgatccagataagaaaccccaggcgaagcagttacagacccgtgcagactac
ctcattaaattactgaataaagatcttgcaaggaaggaagcacaaaggcttgctggagca
ggcaattcaaagaggaggaaaacaagaactaagaagaataaggtgacaaaggctgcaaaa
gcgaaggaagaaataaaaagtgattcatcaccacaaccctcagaaaaatcagatgaagat
gatgatgaggataacaaggcaaatgaaataaaatctgaaaataaagaaaaagctaaaaaa
attccattgctggatactccagttcatattactgcaactagtgaaccagttcctatatcg
gaggaatccgaagaattggatcagaaaacttttagtgtgtgcaaagaaagaatgaggcct
gtcaaagcagcattgaaacagctggatcgaccagagaagggcctttctgaaagagagcag
ctggaacatactagacagtgtctaatcaaaattggggatcacataaccgaatgcctaaag
gagtacacaaatcctgaactaattaaacagtggagaaagaatttgtggatttttgtctct
aagtttacagaatttgatgccagaaagctgcacaaactgtataaacatgcaatcaaaaaa
cgccaggagtgtcagcagcacaatgaccagaatattagcagcaatgtgaatatgcatgta
attagaaacccagatgtggaaagactgaaggagaatacaaaccatgatgacagtagcagg
gacagttactcttctgatagacatttttcacagtatcatgatcatcataaagataggcat
cagggagatgcttacaagaaaaatgactctaggaaaaggccgtattcagcctttagcaat
ggaaaagatcacagagactgggatcactacaaacaagacagcaggtactacagtgatagt
aaacatagaaagttagatgactacaggagcagagaccacaggtcaaacctggaaggaagt
ttaaaagacatccgggctcatacagatcaccgttcccattcagaccacaggatacattca
gatcaccgttccacttcagagtacagtcatcataaatcttccagagattacaggtaccac
tcagactggcaaatggaccacagagcttcgggtagtggcccaaggtcaccattagatcag
aggtctccatatggttccagatctcccctaggacacagatctccatttgaactctcatcg
gatcacaaaagtacacctgaacatacgtggagtagccggaaaacataa
DBGET
integrated database retrieval system
