Chaetura pelagica (chimney swift): 104397450
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Entry
104397450 CDS
T08631
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104397450 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpea03032
]
104397450 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104397450 (TOPBP1)
DNA replication proteins [BR:
cpea03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104397450 (TOPBP1)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104397450 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
104397450
NCBI-ProteinID:
XP_010005714
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MKGNKEPFFVKFVKSSGSSEYFLKALESIKEFQSEEHLQILEEERALSIKENDKSLYICD
PFRGVAFNHLKKLGCRIVGPQVVLYCMQSQRCVPRAEHPVYNMTMADVTVSCTSLEKHVR
EEVHKYVQMMGGCVYRDLSVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
SIMRYTDVNMEDYVCPVFLGCTICVTGLSSSDRREVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIEKGFCQDETMYKIEAGSKLRSTPSTSTPTND
ASKPDSNTLSDVSHISNVNLSGVNETACSSATSSRLDPLPDELENLDMSSFHAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCAGGVRFNQLNEDVTHVILGENTDELKHFLDKTSHRPHV
VTAKWLLESFSKGYLHPVEQYVPLNYQLLKNPVLEEPELKSVFPKNNNVFKKQSANITKH
LKAAEDDFLSQYLNNESTLVEKLTSSTFNDVTHLTVQGENQSSVSNGSLGEPSALAEGAL
LVRKTFLLLGFGEEEESCMADIIKENAGKILPLQSRTIADYAVVPLLGCTVKPTVGDVVT
NTWLITCVEQQLLLDPQSNPLFTPVPVMEGVTPLEDCVLSFSQFTGAERDSLTYLAGLLG
ARVQEFFVRKANAKKGMFASTHLVVREPDGSKYEAAKKWNLPAVTVAWLLECAKTGKRAD
ESKFLVENAEAGGWLLTYEESSITQLSKTPATFKSPDSEQSTCLLEAGRKTAVTPLDINR
FQSKAFQAVISHHIGKSTTVPAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAA
LETPGGHDQKTRKLSTPLSEVIGRNLKLALANSTKNAVALTASPQLTAAQPEVEEEPKPL
ADVVIYVSKKLGKKQSELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERG
IYIVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVEDVRLTSSSKLPSTGRPAEEN
EIIPEDEEDGVTVDQIKETITTGEEQTVRSESKGVLTQALEMRENFQRQLQELMSATSLV
KPQGQRGSLSRNSLDGSPTTPDSTRSVRNGRSRVLEALRQSRQALTDINTEPSQSEQIIW
DDPTAREERARLVSNFQWPNSPSQYPEQGQSNVNKNLDESTFRGSLADAEIAGIAVPEAG
DGDLVEGLENPVCRDPETPVTDHLIPTPQAPSIAFPLANPPVAPQPKEKAVSEDEKAGEE
PEKQRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASMA
AGKWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLSGINVNQKKLALAAMRWRKKIHK
GRQETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSASLFKEATHLFADFS
KLKPDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNSTELGTG
VPQKRKALGEMSSVKRSRAH
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtaacaaggagccgttttttgtgaagttcgtcaagtcctctgggagctcggag
tatttcttgaaagctcttgagtctataaaggaatttcagtcagaagaacatcttcagatc
cttgaagaagaaagagcgctcagtataaaagaaaatgataaatccctttacatttgtgat
cctttcagaggagttgctttcaaccatctcaaaaagcttggttgtagaattgttggacca
caggtagtcctgtactgcatgcagtcccagcgttgtgtcccaagagctgagcatcctgtg
tacaatatgaccatggccgacgtaacagtgtcctgtaccagccttgaaaaacatgttagg
gaagaagttcataaatacgtgcagatgatgggtggatgtgtgtacagagacctcagtgtg
tcagtaactcatctgatagctggagaagttggcagcaagaaatacttggtagctgcttct
ctgaaaaaacccattttgcttccctcttgggttaagacactgtgggataagtctcagcaa
agcataatgagatacacggatgtgaacatggaagactatgtctgtcctgtgttccttggc
tgtacaatttgtgtcactggcttgagtagttcagacaggagagaagttcagcgcctcact
gccgagcatggtgggcaatatacggggcagctcaagatgaacgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaacgtgcattgtgtg
tcagtgcagtggttttctgacagcattgagaaaggcttctgtcaggatgagacaatgtat
aaaatagaagctggatcaaaactgagaagtacacccagtacgtcaacacctacaaatgat
gccagcaagcctgatagtaacaccctttcggatgtcagccacatttccaacgtcaatttg
agtggtgttaacgaaaccgcgtgtagttctgctacgagcagcagattggatcctcttcct
gatgagctggaaaacttggatatgagttcttttcacgcccccgaagatttgttagatggg
tgtcgaatctatctatgtggcttcagtggcaggaagttggacaagatgagaaggcttatt
aattgcgctggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcattttg
ggggagaatactgatgagctgaagcactttttggacaagacatctcacaggcctcatgta
gtgacggcaaaatggttgctggagtcgtttagtaaaggttatctacatccagtggagcaa
tatgtccctctgaactaccagctgttaaagaacccagttttggaggagcctgaattaaag
tcagtttttcccaaaaataacaatgtcttcaagaaacaatctgcaaacattacaaagcac
ttgaaagctgctgaagatgacttcctctctcaatatctaaataatgagtctacattagtt
gagaaactaacatccagtaccttcaatgatgttactcatttgactgttcaaggagaaaat
cagtcttctgtctctaatggctctttgggggagccttctgcactggctgaaggagccttg
ttggtcagaaagacatttcttcttttgggttttggtgaagaggaagagtcctgcatggca
gatattataaaggagaatgctgggaaaattctgccactgcaaagcagaaccattgcagac
tatgctgtggtacctttactggggtgcacagtgaagccaactgttggtgatgttgtcaca
aatacctggctgataacatgtgtggaacagcagctcctactagatccccagtccaatcca
cttttcacaccagtcccagtaatggaaggagttacccctctggaagattgtgttctttct
tttagccagtttactggtgcagagagagactccctgacatacctggcaggactgctagga
gcaagagtccaggaattctttgtgcggaaagccaatgcaaaaaagggaatgtttgccagc
acccatcttgtggtgagagaaccagatggttccaagtatgaagctgcaaagaagtggaat
ctgccagcagtcactgtagcttggctcttggagtgtgcaaagacaggaaagagagcagat
gaaagcaagttcttggttgaaaatgcagaggctggaggttggttattaacatatgaggag
agttccattactcagcttagcaagacaccagcaactttcaaatctcctgattcagaacaa
tctacttgtcttcttgaagctggaagaaaaacagctgtgacccctcttgatatcaacagg
ttccagagtaaagctttccaggctgtaatctctcatcatattgggaagagcacaactgtt
cctgcacaggggggactgccacagaaagaaccatctttacatcttgatacaccatcaaaa
ttcctttccaaagacaagttattcaagccctcttttgatgtaaaggatgctctggcagct
ttggaaactccaggaggccatgatcaaaaaacgaggaaactgagcacacctctctctgaa
gttattggcagaaacttgaaattagccctggcaaacagtacaaagaatgcagtagctctt
acagccagccctcaactgactgctgcacagccagaagtggaagaagaacccaagcctcta
gctgatgttgttatatatgttagtaaaaaacttggtaagaagcaaagtgaactgaatgca
gtagcagcttctcttggggcagactacagatggtgctttgatgaaacagtaacacacttc
atctataagggaggacaaaatgacaacaataaggagtacaaatcagttaaagaacggggc
atatatattgtttcagagcactggcttttagagagtgcccaagaatataaacggctgccc
gaatctctctttcctcacacttacaatcccaaaatgagcttggatatcagtgcagtggag
gatgtcaggctcacctcctccagtaaacttccatcaactggaagaccagcagaggaaaat
gagattattccagaggatgaagaggatggtgtaactgttgaccaaataaaagaaacaatc
actacaggggaagaacaaactgtaagaagtgaatccaaaggagttttaacccaagcacta
gaaatgagggagaatttccaaaggcagctgcaggagctcatgtctgccacatcgttagtg
aaaccacaggggcaaagaggttccctgtcgaggaacagtttggatggttctccaaccact
cctgacagcacaagatctgtgcgaaatggccgaagtagggtcttggaagctctaaggcag
tcgcgtcaggcactcacagatataaatacagagccatcccagagtgagcagatcatctgg
gatgatcctactgcgagggaggaaagagcaagacttgtcagcaactttcagtggccgaat
agtccttcccagtatcctgagcaaggtcagagtaatgtcaataagaacttggatgagtct
accttcagaggatctttagcagatgcagagattgctggtatagctgttcctgaggctggg
gatggagatttggttgaaggtctagaaaatcctgtgtgtagagatcctgaaacaccagtt
acagatcacttgatccccactccgcaggcccccagcattgctttcccactggctaaccct
cctgtggcaccacagcccaaagaaaaggctgtttcagaagatgagaaggctggtgaagaa
ccagaaaaacaacgtaaatttcagctgtcttctcttaatcctcaagaaagatttgattac
tgccatctgattgaggaattaggtggaatagtacttgagaaacagtgctttgatccaagt
tgcacacacattgttgtgggacatcctcttcgaaatgaaaaattcttggcttcgatggca
gctgggaaatgggtgcttcatcgttcctacctggaggcatgtagaggagctggctgcttt
gttcaggaagaagattatgagtggggaagtaattccatacttaatgtcttgtctggaatc
aatgtaaaccagaagaaactagcacttgcagccatgaggtggaggaaaaaaattcataaa
gggaggcaagaaactggtattgttgagggagctttcagtggctggaaagtgatcctgaat
gttgaccaaaccaaggaagcaggattcagacgccttcttcagtcaggaggagcaaaagtg
ttttctggtcattctgcatctctctttaaagaagctactcatctctttgctgacttcagc
aagctgaagccagatgacagcagggtgaacgtagcagaggctgcagcccagggagtgaac
tgcctgaaacccgagtacatcgctgactacctcatccaggatccacctccaccaatggag
tcttactgcctgccagaagctgaatcttaccttcagaatagcacagaacttggaactgga
gtaccccagaaaaggaaagcactgggagaaatgagcagtgtcaagagatccagagcacac
taa
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