Chaetura pelagica (chimney swift): 104397989
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Entry
104397989 CDS
T08631
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104397989 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpea03041
]
104397989 (DDX42)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104397989 (DDX42)
Spliceosome [BR:
cpea03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104397989 (DDX42)
Complex B
104397989 (DDX42)
Complex C
U2 SnRNP specific factors
104397989 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
DUF460
Motif
Other DBs
NCBI-GeneID:
104397989
NCBI-ProteinID:
XP_010006331
LinkDB
All DBs
Position
Unknown
AA seq
944 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQLHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSVASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNVTGPDGPAAPKGVPGFTSSGSLSSVPTFPSA
GVQGFNSTNASSNSREGVGGGGGSGGGGSSGGGGVRERYPDNRTGRHNEPPRGRYNELQQ
RHGEGGGRHSDAHRHGEGRHGDSHRQGDNHRQGDNHRQGDNRHFTEGGGGSRNNGDSRNS
SDGRSNNNESRNGENRKDPTSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggccctggtactaagagaggctttggttttgggggatttgct
attacccctgggaagaaagaggagcccaagctgtctcagcagtcccacagcgcgttcgga
acagccggttcttctgctgcctttgcaaaatcagcacctcctcagctgccttctttctac
aaaattgggtcaaaacgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcctgcagagaattcccccacccgccag
cagcttcactccaagtcagcagactctgacagtgatgatgaccccctggaggctttcatg
gctgaagtggaggatcaagctgctcgagacatgaaaagacttgaagataaagacaaagaa
aagaagaatgtcaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgacagtgatgggaatccaattgcaccctccaaaaaaatcattgaccctctt
ccacctattgaccattcagagattgaatatccaccatttgagaagaacttctatgatgag
cacgaggagatcaccagcctcactccacagcaagtcgtggagttacgtcacaagctcaat
ctccgggtctctggtgctgctcctccaaggcctggcagcagttttgctcattttgggttt
gatgagcaacttatgcatcagatcaggaaatctgagtatacccaacccactcctatacag
tgtcagggtgttccagttgccttgagtggcagagatatgattgggatagctaagactgga
agtgggaaaacagcagccttcatctggccaatgctgattcacatcatggatcaaaaggag
ctggaaccaggggatggtcccattgcagtcattgtgtgtcccaccagagagctttgccaa
cagatccattctgagtgcaagcgcttcgggaaggcgtacaacctgcgctctgtggctgtg
tatggaggaggcagcatgtgggaacaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gttagatcagttgccagccatgtacgtcctgacagacagaccctcctgttcagcgccacc
ttccgcaagaagatcgagaaactggctcgagatattctgatcgaccccattcgagttgtg
cagggagacattggagaggcaaatgaggatgttactcaaattgtggagattttcccctct
ggccccagcaagtggaactggttgactcggcgcctcgtggagttcacctcttctgggagt
gttctcctctttgtcaccaagaaggcaaatgcagaagagctggccaataacctcaagcag
gaggatcacaacctggggctgcttcatggggacatggaccagagtgagaggaataaagtc
atttcggaatttaagaaaaaggggatcccaatcctggtggctactgatgtggcagctcgt
gggttggatattccttccattaagactgtgattaattacgacgtggctcgggacatcgac
acgcacacccaccggatcggtcggacaggcagagctggggagaagggagttgcctacact
ttgctgacccccaaagacagcaactttgctggtgatcttgtcagaaatctggaaggtgct
aatcaacacgtttccaaagagctgctggatctagcaatgcagaacccctggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagttgaatattggtggtggtggtttagggtac
cgtgagcgtcctggtctggggtcagaaaactctgaccgtggcaacaacaacaatgtgatg
agtaactacgaggcttacaagccatccagtggggccatgggagacagactcacagcaatg
aaagcagcttttcagtcccagtataaaagccactttgttgctgcaagcttaaataaccaa
aagactgggagctctgctgctggtgccagtggctggaccagcgccgggagcttgaactca
gtgcccaccagttcagcccagcaaaacgtgaccggtccggacggccccgccgcgcccaag
ggtgtcccgggattcaccagctcggggagcttgagtagcgttcccacctttcccagtgcc
ggggtccagggcttcaacagcacaaatgccagcagcaacagtcgggaaggtgttggtggc
ggcggtggcagcggcggcggtggcagcagcggtggtggtggtgtcagggagcgctacccc
gacaaccggaccggtcgccacaacgagcccccgcgtggtcgctacaacgagttgcagcaa
cgccacggggaaggaggtggtcgtcacagtgacgcccaccggcacggggagggcaggcac
ggcgacagccaccgccagggcgacaaccatcgccagggcgacaaccaccgccagggtgac
aaccggcacttcaccgaggggggcggtggcagccgcaacaacggcgacagcaggaacagc
agcgatgggaggagcaacaacaacgagagcaggaacggggagaacaggaaggatcccacc
agccgagacaacaagacagatgggtttgctgtcccagagcccccaaaacgtaagaagagc
cggtgggacagttaa
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