Chaetura pelagica (chimney swift): 104398732
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Entry
104398732 CDS
T08631
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104398732 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104398732 (DDX6)
03036 Chromosome and associated proteins [BR:
cpea03036
]
104398732 (DDX6)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104398732 (DDX6)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104398732 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
104398732 (DDX6)
Chromosome and associated proteins [BR:
cpea03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104398732 (DDX6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
104398732
NCBI-ProteinID:
XP_010007178
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ttgagaggccctgtaaaacccagtgggggcccaggaggtggaggcacacaaactcagcaa
cagatgaaccagctgaaaaatgccaacacaatcaataacggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaggatctgagaatcaaaacttcggacgtgacctccacaaaaggaaacgagtttgaggat
tactgtttgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatcc
cctattcaggaggagagcatccccattgctttatctggtagggatatcttggctagagcg
aaaaatggaacaggcaagagtggagcctacctcattcctttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgattgttcccacacgtgaactagccctgcaggtc
agtcaaatctgtatccaagtcagcaaacacatgggaggtgccaaagtgatggcaacaaca
ggaggaaccaatttgcgagatgacataatgagacttgatgatacagtgcatgtagtgata
gctacacctgggagaattctcgatcttatcaagaagggagtagcaaaagttgagcatgtc
cagatgatagtattggatgaggcagataagttgctgtctcaagatttcgttcaaataatg
gaagacattattctcacgctacctaaaaacagacagattttgctctactcagccactttt
cctttgagcgtacagaaattcatgaattcccatttgcagaaaccctacgagattaatctg
atggaggagctgaccttgaagggagttactcagtactatgcctatgtaaccgagcgtcag
aaagtacactgcctcaatacactcttttccaggctccagattaaccagtcgataattttc
tgcaactcctctcaacgggttgaattgctcgccaaaaagatctcccagctgggctattcc
tgcttctatatccatgctaaaatgaggcaggagcaccgcaatcgtgtgtttcacgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctatttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgatttcccaaagctggcagagacttatctccat
cgtattggcagatcaggtcgctttggtcatcttggcctggccatcaacttgatcacttac
gacgatcgattcaacctgaaaagtattgaggagcaattgggaactgaaattaaacccata
ccaagcaacattgacaagagcctgtatgtggcagaataccacagcgaacctgtagaagat
gagaaacagtaa
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