Chaetura pelagica (chimney swift): 104398770
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Entry
104398770 CDS
T08631
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cpea04515
]
104398770 (PCDH18)
Cell adhesion molecules [BR:
cpea04515
]
Cadherins
Protocadherins
104398770 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
PepSY
Syndecan
FAM176
Cadherin_C_2
DUF3418
Motif
Other DBs
NCBI-GeneID:
104398770
NCBI-ProteinID:
XP_010007218
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MNCKNLQMHRIGSKMHFIFLFALMIISFNKAVLGKNLKYRIYEEQRVGSVIARLSEDVAD
VLLKMPNPSSVRFRAMQRGNSPLLVVREDNGEISIGAKIDREQLCQKNLNCSIEFDVITL
PTEHLQLFHVEVEVLDINDNSPQFSRALIPIEISESAAVGTRIPLDSAFDPDVGDNSLHT
YSLSANDFFSIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDKGVPQRSGSSLLK
ISISDSNDNSPVFEQQSYVIQLLENSPVGTLLIDLNATDPDEGANGKVVYSFSSHVAAKI
LETFMIDSEKGHLTLLKQVDYEVTKSYEIDAQAQDLGPNSIPAHCKIIIKVVDVNDNRPE
ISLNLMSPEKEEVAYLSEGSPLDTFVALVRVQDKDSGVNGEIVCKLHGHGHFKLQKTYEN
NYLILTNATLDREKRSEYSLTVIAEDKGTPSLSTVKHFTVQISDENDNPPRFQTNRYEVV
ILENNSPGAYITSVTATDPDLGDNGQVTYTILESYILGSSITTYVTIDPSNGAIYALRTF
DHEEVNQIAFVVQARDGGSQQLVSNTTVVLTIIDENDNAPVIVGPVLRNSTAEISIPKDA
GVGFLVTRIRATDRDSGMNSELSCSIAADKENSIFVIDPKTCDISINVSVESVPAKQWEF
FVIVQDKGSPQLSTKALLKCTVFEYVYSFSSTEATLVSQPSLDVSMITIISLGSICAVLL
VIMVIFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGEITLVPTVNGTLPIRSH
HRASPSSSPTLERGQMSSRQSHHSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQL
LSMLHQGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRESPID
RLLGEGFSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEF
PLPQQQLQQQQGLEEDAQPSEASEKKKSFSTFGKDCQSEEESGDTCTSSLLSEMSSVFQR
LLPPSLDAYTECNEVERANSLERRKGHLPAKTVNYPQGVAAWAASTHFQNPANNGATLGT
HSSAQPSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQN
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcaaaaacttacaaatgcaccgaatcggcagtaaaatgcactttatattcctt
tttgcactgatgataatatctttcaataaggctgtgctgggcaagaatttgaaatacagg
atttatgaggagcagagagttggatcagtaattgcaagactgtcggaggatgtagctgat
gttttattaaaaatgcctaacccgtcctcggttcgcttccgagccatgcagagggggaat
tctcccctgctcgtagtccgtgaggataatggagagatcagcataggagctaagattgac
cgggaacaactctgccagaaaaacttaaactgctccatcgagtttgatgtgatcactctg
cccactgagcatctgcagcttttccatgttgaagtggaagtgctggacattaatgacaac
tccccccagttttctagagctcttatccctattgaaatatccgagagtgcagctgttgga
acccggatccctctggacagcgcttttgatccggatgtaggggacaactcccttcacact
tactccctttctgcaaatgatttttttagcatcgaggtgaggaccaggactgacggtgct
aagtatgcagagctgatcgtggtcagggagctggaccgggagctgaagtcgagttacgaa
ctccagctcactgcttcggataaaggggtgcctcagaggtctgggtcgtccctcctgaaa
atcagcatttctgattccaacgacaacagccccgttttcgaacagcagtcgtatgtaatc
caactcttggagaattcaccggttgggactttgctcatagacctcaatgccaccgaccca
gatgagggcgctaacgggaaggtcgtgtactccttcagcagccatgtggctgccaaaatc
ctagagactttcatgatagattcagaaaaggggcatctgaccctcctgaagcaagtggac
tacgaagtaaccaaatcctatgaaattgatgctcaggcccaagatttggggcccaattct
attccagctcactgcaaaattataattaaagttgtggatgtgaatgacaacagacctgaa
attagcttgaacctgatgtccccagagaaagaggaggtggcttatctttctgaagggtca
cccctggacacttttgttgccctggtcagagtccaggacaaggactctggtgtgaacgga
gagatagtttgcaagctccatggccatggccactttaagcttcaaaagacctatgaaaat
aactatttaatcttgactaatgccactctagatagggaaaagagatctgaatacagcttg
actgtaatagcggaggacaagggaacgccgagtctctccacagtgaaacactttactgtc
caaatcagtgatgagaatgacaacccaccccgcttccagacaaacagatatgaagttgtt
atcttggaaaataactctccaggagcgtacatcacatcagtcacagccacagacccagat
ctaggtgacaatgggcaggtgacctacactattttggagagctatattttgggaagctct
ataaccacctacgtgaccatcgatccctccaacggggcgatctatgctctgcgaaccttc
gatcacgaagaagtaaatcaaattgcctttgtggttcaagctagggatggagggagtcag
cagcttgttagcaataccacggttgtactaaccatcattgatgaaaatgacaatgctcct
gtcattgtggggccggtgctacgcaacagcacagcagaaatctcaatccctaaagatgct
ggggttggcttccttgtcaccaggataagggctacagatagagactctggtatgaactct
gaactcagctgctccatagcagctgacaaggaaaacagcatctttgtgattgatcccaaa
acttgtgacatctctatcaatgtgagtgttgagtcagttccagcaaaacagtgggagttt
tttgtgatagtccaggataaaggcagtcctcagcttagtactaaagcacttctgaaatgt
acagtttttgagtatgtttattcattttcaagcacagaagcaactctggtaagccaaccc
tccttggatgtctccatgataacaattatatccttgggatcaatatgtgccgtgttgttg
gtcattatggttatctttgctacaagatgtaatcgagagaaaaaggacaccaggtcctac
aactgtcgtgtcgcagaatcaacctaccagcaccacccaaaacgaccctcaaggcagatc
cacaaaggggaaattacattagtgccaacagttaatggcactttacccatcagatcccac
cacagagcttctccatcatcatctccaaccctggaaaggggacaaatgagcagccgacag
agccaccacagccaccaatccttgaacagcctggtgaccatctcctctaatcacgtgcct
gagaatttctctctggaactcacccacgctaccccggctgtggagcaggtttctcagctt
ctctcgatgcttcaccagggccagtatcaaccaaggccaagttttcgcggaaacaagtat
tccagaagctacagatatgccctacaagatatggataaatttagcttgaaggacagtggt
cggggtgatagtgaagctggagacagtgattatgatttggggagagagtctccaatcgac
agacttcttggggaaggattcagtgaccttttccttacagatgggagaattcctgcagcc
atgcggttgtgcacagaggagtgcagggttctgggccactccgaccagtgctggatgcca
ccattgccctctccctcctccgattacagaagtaacatgttcatccctggggaggagttc
cctttaccccagcagcagctgcagcagcagcagggcctggaggaagatgcccagccttct
gaggccagcgagaagaagaagagcttttcaacatttggtaaagactgccagagtgaggag
gagtcgggggacacctgtacctcctctctcctctcggaaatgagcagtgtcttccagcgc
ctgctgcctccctcactcgatgcctacacggagtgcaacgaggtggaacgtgccaactcg
ctggagcgcaggaagggacacttgccagccaagactgtaaattatccacagggggtggca
gcctgggcagccagcacgcatttccaaaaccctgccaacaacggggccacactggggact
cactcgagcgcgcagccttcctctaagtggctgccagccatggaggagatcccagagaat
tatgaagaagatgattttgacaacgtgctcaaccacctcagtgatggcaaacacgaactg
atggatgccagtgagctggtggcagaaattaacaagctgctgcaagatgtccggcagaac
taa
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