Chaetura pelagica (chimney swift): 104398853
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Entry
104398853 CDS
T08631
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpea04131
]
104398853 (LRBA)
Membrane trafficking [BR:
cpea04131
]
Endosome - Lysosome transport
Others
Others
104398853 (LRBA)
Endosome - Golgi transport
104398853 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
104398853 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
SUKH_6
IspD
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Catalase-rel
Motif
Other DBs
NCBI-GeneID:
104398853
NCBI-ProteinID:
XP_010007308
LinkDB
All DBs
Position
Unknown
AA seq
2831 aa
AA seq
DB search
MASEDKQVVEPTGDDGGGAAVKEGNAAEGGTVLQPLNPGVPIRGIRMKFAVLTGLVEVGE
VSNRDIVDTVFNLLVGGQFDLEMNFIIQEVEGITCMVDLLDKCDITCQAEVWSMFTAILK
KSIRNLQACTEVGLVEQVLKRIDRADNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGE
KGRWPPHAGKLLSVLKQMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRM
DPVNNINVDKDKPYLYCFRTNKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKW
YMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCG
QMTSVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLDEHHKLLLYDGKLSSAIAF
MYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSALHSIGGVQVLFPL
FAQLDYRQYSSDHIDTTVCSTLLAFIMELLKNSIAMQEQMLSCKGFLVIGYSLEKSSKAH
VTRAVLELCLAFSKYLSNLNTGVPLLKQLCDHVLLNPAIWIHIPAQVQLTLYTYLSTEFI
GTVNIYGAIRRVGTVLLVMHTLKYYYWVVNPQDRSGITPKGIDGPRPTQKEILSLRAFLL
MFIKQLVMKDYGIKEDELQAILNYLLTIHEDDNLMDVLQLLVALMSEHPSSMIPAFDQRN
GLQVVYKLLASQSEGIRVQALKVMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTSLI
TMTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIAVLLRNSPQCPEALEVR
RAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCCFNPKTSEEQKITEMVYTIFRILLY
HAIKYEWGGWRVWVDTLSITHSKVTFEMHKESLSQMYREYQGKGGEGSGIHSSVPIRTIS
GVSNEAEIKGKQECLELKEDATAPSRVDGGVECSTEKKETNTSTDDDQQTHLVSNHREEL
KGVERETAQNLKAMSCVEFSPEPGEINPNVSEISTGIAEAIEESLSKADELVEESVAVTA
ASLTVQTTLEEKTPESPDRVEKSTVEVEDEDDFVDLKEESGMSLPSEEFVETKKECISDE
SEVTKQEEAVEEQPESVLLQSKDIEGVDGEKEELTSLPEAVSSAVQEIATQSDSKGKKKL
VKGRILSSETKAAEENANARVPAPAGTSDKRIAKLDVSSVASDTERLELKANTCLEAPVP
PRSIPETSRQQDSSGQELAATSDEQRRESRSAVFRIPEFKWSLMHQRLLTDLLFSIETDI
QMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMIMACGGILPLLSAATSATHELE
NIEPTQGLSVEASLTFIQRLINLVDVLIFASSLGFTEIESEKNMSSGGILRQCLRLVCAV
AVRNCLECQQHAQMKPTGDIGKIQKTVPGFIGTGKSAAKSPVDIVTGGISPIRDHDRLLQ
DMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERRPPNHSQSFK
ESENENSETPATDVENPSAAVCALASTEDSKSTASVQRRDSGLGEEPTSGQANNSDGVAE
AGPLNISAGPDAVSEVLCTLSLEVNKSQEGRSETGTEDSKPVTSVPVAKNVNVKDILRSL
VSTPGDGSAVDSALLPPTFLGVLGEGAAEQSVQFHSFDRSVVVPTKKSTISSSAAAMSIP
TNAVSVVSSLDSAQAPDLSVESPGRGSSNSKLPSVPTVSSVPEDSASNMSITDRLEHALE
KAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGLVCMKSSSSVVELVMLLCSQEWQNSIQ
KNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDINRHAEFESLCAQYSAD
KREEEKMCHHLITAAKYRDQVTATQLIQKIINILTDKHGAWGSSAPSRPREFWRLDYWED
DLRRRRRFVRNPLGSTHPEATLKAAGEHAPDEDILVKGKQSIKSQVLGNQNSESEILLEG
DDDIMSFMEEREVENLTGPVALSTFEVDEEDPSFKKIDPKILAYTEGLHGKWLFSEIRSI
FSRRYLLQNTALEIFMANRVGVMFNFPDQATVKKVVNCLPRVGVGTIFGLPQTRRISLAS
PRQIFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVITNYESEELDLT
LPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFALTWLLRIEPF
TTFFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEIFVNSNNYNLGV
MDDGTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRSL
NVFYYLTYEGAVNLSSITDSVLREAVEAQIRSFGQTPSQLLIEPHPPRSSAMQVYLLLQS
PLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLTNPAVITVTANRLFAVNKWHNLPGA
VQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKS
FRVYSTDSGKLIQVIFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKTNIIG
DNPRASDFATPRAILTGHDYEITCATICAELGLVISGSKEGPCLIHSMNGDLLRTLAGPK
TLEGPENCLKPKLIQASREGHCVIYYENGLFCVFSVNGRLQATMETDDKIRAIQLSRDGQ
YLLTGGDNGVVMVWQMWDLKRLFAYPGCDAGIRSMALSYDQRCIMTGMASGSIVVFYNDF
NRWHHEYQTRY
NT seq
8496 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgaggacaaacaagtcgttgagccaacaggtgatgatggaggaggagcagcg
gtaaaagaaggaaatgctgctgaagggggaactgtgctgcagcctttgaatcccggagtc
cccatccgaggcatcaggatgaagtttgctgtgctgacaggcctggtggaagttggtgaa
gtgtccaacagagacatagtcgacactgtgttcaatctgcttgttggaggacaatttgac
ttggaaatgaactttatcatccaagaagtagagggcatcacctgcatggtagacttgctg
gacaagtgtgacatcacctgccaagctgaggtgtggagcatgtttacagcgatcttgaag
aaaagtatacgcaatctgcaagcatgcacggaagtggggcttgttgaacaagtgctcaag
aggattgatagagctgacaacatgattgcagatctcttagtggatatgctgggtgtgttg
gctagctacaacttgacagttcgagagctaaagttattcttcagcaagcttcaaggagaa
aaagggagatggccacctcatgctgggaagctattgtctgtgttaaaacaaatgcctcag
aagtatggacctgatgccttcttcaactttccaggaaaaagtgctgcagctattgcctta
cctcctatagccaagtggccataccaaaatgggtttactttccacacttggctaagaatg
gatcctgtaaataatatcaatgtggataaggataagccttatttatattgttttcgaaca
aacaaaggacttggttattctgctcactttgttggaggctgcttgattgtaacatccata
aaatcaaaaggaaaaggtttccagcattgtgtaaaatttgatttcaagccacaaaagtgg
tatatggttactatagtgcacatctataaccgatggaagaatagtgaacttcgatgttat
gtgaatggggaactggcatcttatggagaaataacatggtttgtcaacaccagtgataca
tttgacaagtgtttcctgggttcttcagaaacagctgatgccaatcgagtgttctgtggg
caaatgacatctgtttacctttttagtgaggctctcaatgctgctcagatctttgccatt
tatcagcttggcctggggtataagggaacattcaaattcaaggcagaaagtgatctcttc
cttgatgaacatcacaaattgttactctatgatggcaaactatccagtgctattgctttt
atgtacaatccaagggctacagatgcacagctgtgtctagagtcatcccctaaggataac
ccttctatttttgttcattcaccacatgccctcatgctgcaggatgtgaaagcagtctta
acacactctatccaaagtgccctgcactccattggaggcgtgcaggtacttttccctctc
tttgcacagttagactataggcagtattcatcagaccacattgacacaactgtttgttct
actttattggctttcatcatggagttgttgaagaactccattgctatgcaagaacagatg
ctttcctgtaagggcttccttgtgataggatatagcctagaaaagtcttccaaagcccat
gttacccgagctgtgctggaactttgccttgccttttcaaaatacctgagcaacttaaac
acaggggtgcccttactgaagcagctgtgtgatcatgttctccttaatcctgcaatatgg
attcatatcccagcacaggttcagctgaccttgtacacttacctgtccactgagttcatt
gggactgttaacatatatggtgcaatccggcgggttgggacagttcttttggtcatgcat
accctgaagtattattactgggtagtgaatcctcaggatcgcagtggtataactcccaag
ggcatagatggtccacggcctactcaaaaagagattttatctctgcgagcattcttgttg
atgttcattaaacagctagtgatgaaggactatggaataaaagaagatgaattgcaagct
atcctcaattatctgctcactatacatgaggatgacaatctaatggatgtcttgcagttg
ctcgttgctctgatgtcagagcatcccagttctatgatccctgcttttgatcagaggaat
ggattacaggttgtctacaagcttttagcatcacaaagtgaaggcatcagggtgcaagct
ctaaaagtgatgggatatttcttaaagcatctagctccaaagagaaaagctgaagtcatg
cttggacatggattattctctttgttggctgaaaggctgatgcttcagacaagcttaatc
accatgaccacatacaatgtcctatttgagattctgactgaacagatttgcactcaagtg
atacataaacagcatcctgacccagattcaacggtgaagatacaaaatcctcagattttg
aaggttattgcagtcctgctacgtaattctccacagtgcccagaggctttggaggttcga
cgagcctttctctcagacatgattaaactttttaataacagcagagaaaataggaggagt
ttgttgcagtgctctgtctggcaggagtggatgctttctctttgctgttttaatccaaag
acttctgaggaacagaagataactgagatggtgtatactatatttcgaattttgctctac
catgcaatcaaatatgagtggggtggttggcgtgtttgggtggacacactatccatcaca
cactcaaaggtaacttttgaaatgcacaaggagagtctttctcaaatgtatagggagtac
caagggaaaggaggtgaagggagtggaatacattcttcagtaccaattagaacaatctct
ggagttagcaacgaagctgaaatcaaggggaagcaagagtgtttggagttaaaagaagat
gctactgccccttcccgtgttgatggtggtgtggagtgcagcactgaaaaaaaagagaca
aacacctcaacagatgatgaccaacaaactcatttagtgtctaatcatagggaggagtta
aagggggtggagagggaaactgcacagaacttaaaagcaatgtcttgtgtggaattttct
ccagaaccaggagaaataaatcccaatgtttcagaaattagtactggaatagctgaagca
attgaagaatcattgagcaaagctgatgagcttgtggaggaatcagtagctgtcactgct
gcttctttaacagtgcaaactactctggaagaaaaaactcctgagagtccggatagagtg
gaaaaatcaacagtagaggtggaagatgaagacgattttgttgatttgaaagaggaaagt
ggtatgtctttaccatcagaagagtttgtagaaacaaaaaaggaatgtatctctgatgaa
agtgaagtgacaaagcaggaagaagcagtagaggagcagcctgaatctgtgcttttacaa
tccaaagatattgaaggtgtggatggggaaaaagaagaactgacttctttaccagaagca
gtgagttctgcagttcaagaaatagcgactcaatcagattcaaaagggaaaaagaagctg
gtgaaaggaaggattctttctagtgagaccaaagcagctgaagaaaatgcaaatgcacgt
gtgccagcacctgctggaacctctgataaaagaatcgccaagcttgatgtttctagtgtt
gcatcagatacggaaagactggaactgaaggctaacacatgtctagaagcacctgtgccc
cccagatccatacctgagacctcaaggcagcaagattcttcaggacaagagctagctgct
acatcagatgagcagagaagagaatctaggtcagctgtgttccgtattcctgagtttaag
tggtcactgatgcatcagcgcttgctcacagatttactcttttccatagaaacagatata
cagatgtggagaagccattccacaaaaactgtgatggactttgtgaatagcagtgacaat
gtcatatttgtgcacaacacaattcacctcatctcacaagtgatggacaacatgatcatg
gcttgtggtggtatattgccgttgctttctgctgccacatccgctactcatgaattggag
aatattgagccaactcaagggctttcagtagaagcatctttaacatttatccagagatta
atcaaccttgtggatgtgctaatttttgcaagctctcttggtttcactgaaattgagtct
gagaaaaacatgtcatctggaggaattctacgacaatgtcttcgtctggtgtgtgcggta
gcagtaagaaattgtttggagtgtcagcagcatgcacagatgaagcctactggagacatt
gggaagatccaaaaaacagtgccgggctttataggaacaggaaaatccgcagcaaagagt
ccagtggacattgtgactggtggcatttctccaatacgagaccatgacagacttttgcaa
gatatggatattaacaggcttcgagctgtggtgttcagagatatagaggacagtaaacag
gctcagtttttggcattggctgttgtatattttatttctgtgctcatggtttcaaaatac
agagatatactggagccccagaatgaaagacgaccaccaaaccatagccagtctttcaag
gaatcagagaatgaaaatagtgaaactcctgctacagatgtggaaaatccatctgctgct
gtctgtgctttggcctccactgaagattcaaaaagtacagcatctgtacaaagaagagat
tctggtctgggggaggaacccacttcagggcaagcaaacaattctgatggtgttgctgaa
gcaggacctctgaacatcagtgcaggtccagatgcagtcagtgaagtactgtgcacgctc
tcattagaagtaaataagtctcaggagggcagaagtgagacaggaaccgaggatagtaag
cctgtaacttctgtgccagttgcaaaaaatgtcaatgtaaaggacatcttgagaagcttg
gtaagcacaccaggtgatgggagtgcagtggattctgctcttctgccgccaaccttcctt
ggagttcttggcgagggagctgctgagcagtctgtacagttccattcctttgacaggagt
gtagttgtcccaacgaagaaatcaaccatttcctcttctgcagctgctatgagtattcct
acgaatgctgtcagtgtggtttcttctttagattcagcacaagccccagatttgtcagta
gaatctcctggaaggggatcatctaattcgaaattgccgtctgtccctacggtttcttca
gtgcctgaggattctgcttcaaatatgagtattacagacaggcttgaacatgctttggaa
aaagctgccccacttctaagagagatttttgtggattttgctccctttctttctcggact
cttttgggcagccatggacaggagttgctgatagaaggtcttgtgtgcatgaaatcaagc
agttcagttgttgagctggtgatgcttctttgctctcaggagtggcagaactctatacaa
aagaatgctggccttgcctttattgagcttgtcaacgaaggaaggttgctgagtcaaacc
atgaaagaccatttggtaagagtggctaatgaagcagaatttatcttgagcagacagaga
gcagaggatattaaccgccatgctgaattcgagtcactgtgtgcccagtattctgcagac
aaacgggaagaagaaaaaatgtgtcatcatttgataacggcagctaagtaccgagaccag
gtgactgcaactcaactaatacagaaaattatcaacattctgacagacaagcatggagcc
tggggaagctctgcaccaagtcgtcctcgtgagttctggcgccttgactactgggaagat
gacttgcggcgccggcgacgatttgtgcgtaacccccttggatcgacacatcctgaagcg
acactaaaagcagccggagaacatgctcctgatgaggatatacttgttaaaggaaagcag
tccatcaagagtcaagttttaggaaatcagaactcagaaagtgagattctcttagaaggc
gacgatgacatcatgtcattcatggaggaaagagaagtggagaacttaacgggtccagtt
gccctaagcacatttgaggtggatgaagaagatcccagttttaagaaaatcgacccgaag
attctggcatatacagaaggacttcatggaaaatggctcttttcagagatccgatctatc
ttttcccgacgttaccttttgcaaaatacagcactggagatattcatggcaaatagagtg
ggtgtcatgttcaactttcctgaccaagcaactgtaaagaaagtggttaactgtctacct
cgggtcggtgttggtactatctttggactaccccagaccagacgcatttctttggccagt
ccacgacagattttcaaagcttccaatatgacccagcgatggcaacaccgagaaatttcc
aactttgaatacctgatgtttctaaatactatagcaggtcgaacttacaatgatttaaat
cagtaccctgtgttcccttgggttatcacgaattatgaatcagaggagttggaccttaca
cttcctagcaacttcagggatttgtcaaagcctattggagctttgaatccaaagagagca
gcgttctttgctgaaagatatgaatcatgggaagatgaccaggttccaaaatttcactat
ggcacacattattcaactgcaagttttgcactcacgtggttattaagaattgaacccttt
acaacatttttcctaaatctacaaggtggaaagtttgatcatgcagacagaaccttctcg
tctatttcaagagcgtggcgcaacagtcagcgtgacacttccgatatcaaggaattgatt
cctgaattctattacctcccagagatatttgtcaacagcaacaattacaatctgggagtg
atggatgatggaacagtggtgtctgatgttgaacttccaccatgggccaaaaccccagaa
gaatttgttcgtataaacagactggcattagaaagtgagtttgtttcctgccagcttcac
cagtggattgatctgatttttggctacaaacaacaagggccagaggctgttaggtccctg
aatgtgttctattatttgacatatgaaggagctgttaatttaagttcaataacggattct
gtattgagagaggctgttgaagctcaaatacgaagttttggacagaccccttcccaactg
ctcatagaaccacatcctccaagaagttctgccatgcaggtgtatctcctcctgcagagt
ccgttgatgttcacagaccaagctcaacaggacgttatcatggttcttaagttcccatcc
aactcccctgtcactcatgtagcagccaacacccagcctggtctgaccaatcctgctgtg
atcacagttactgcaaataggctatttgctgtaaacaagtggcataatcttcctggtgct
gtacaagaccagccttaccagctgccagtggaaatcgatcctctcatagccagcaataca
ggtatgcacagaaggcaaatcactgaccttttagaccaaagcattcaggtacattcccag
tgtttcgtcatcacctctgataatcgttacatcttggtctgtggcttctgggacaagagt
tttcgtgtttattctactgactcaggtaaattgatacaagtaatatttggacactgggat
gttgtaacctgtcttgctcgttctgagtcctacattggaggaaattgttacattctctca
ggatcgcgtgatgcaacgttgctgctctggtactggaacggcaaaaccaatatcattggt
gataacccaagagccagtgattttgcaactcctcgagctattttgacaggacatgactat
gagatcacctgtgctaccatttgtgctgaacttggtctggtaataagtggttccaaagaa
ggaccatgtctcatacattctatgaatggagatctactgaggacattagctggtcctaaa
acattagaaggtcccgaaaattgcctgaaaccaaaacttattcaagcttcaagagaaggc
cactgtgtcatatattatgaaaacggcctcttctgtgtattcagtgtgaatgggagactt
caagccactatggaaacagatgacaagataagggcaattcagctcagtcgagatggacag
tatctgcttacaggtggagacaatggagttgtcatggtgtggcagatgtgggacctcaag
cggctttttgcttacccagggtgtgatgctggaatccgatccatggccctgtcatatgac
caaaggtgtataatgactggcatggcatctgggagcatagtggttttctacaatgacttc
aatcgttggcatcatgaatatcaaaccagatactga
DBGET
integrated database retrieval system
