Chlamydia pecorum P787: CPE3_0833
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Entry
CPE3_0833 CDS
T02853
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpec
Chlamydia pecorum P787
Pathway
cpec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPE3_0833 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpec03400
]
CPE3_0833 (mfd)
Enzymes [BR:
cpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPE3_0833 (mfd)
DNA repair and recombination proteins [BR:
cpec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPE3_0833 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
DUF3638
AAA_19
ERCC3_RAD25_C
RecG_dom3_C
ADDB_N
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGW40155
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All DBs
Position
945763..949026
Genome browser
AA seq
1087 aa
AA seq
DB search
MAMDFNPINLELSFTQRLYQHTAPLLIENVRPGALAFLAAKMFHDTAQPIIMITTPARLD
DLFENLSTFLPTLPVEFPSSEIDLSPKLVNIDAVGKRDYLLYTIHKNTAPLVCVTTLKAL
LEKTLSPKESAKRHLELHVGDTLDPETTVELCKDLGYTQVTVAREKGEFAHRGGIVDIFP
LSATEPFRIEFWGEKILSLRAYNPSDQLSIEKVSQILISPVEKISSSGTLSHTLLDFFST
PPLCLFDDLETLENDFAEISGTLASFPERFLSLEGFFQRISNNKSMFFSEAYFPNVQIKK
NDAVTIQVFNHALDVQRVSLPLLYPNEILEHNENPLLSFLQRLQELLPEQNASLKLALYS
TKTKSLKEARTLAQQFHKTHVSIYENSGNLSSSFALVQEGFVAISLSEFASTKILRRQKQ
RNYFSVTTAEEVYVPVPGETVVHLHNGIGKFVGVEKKPNHLNIETDYLVIEYADHAKLYV
PSDQAYLISRYVGASDTPPEFHNLNGSKWKRSRELTEKSLVAYAEKLLQLEAQRSTTPAF
VHPPHGEEVIKFAETFPYEETPDQLKAIEQIYEDMMSEKLMDRLICGDAGFGKTEVIMRA
AVKAVCDGHRQVIVMVPTTILAHQHYETFKQRMAGLPINIAVISRFSQTKEQKVIFQKVA
EGGIDILIGTHKLINKHLEFHHPGLLIIDEEQRFGVKIKESLKERYPNIDCLTVSATPIP
RTLYMSLTGARDLSIITMPPLDRLPVSTFLMEHNDETLSAALRHELLRGGQAYVIHNRIE
SLFRLAENIRTLIPEARIGVAHGQMTSEELAKIFHKFKTQQTNILIATAIIENGIDIPNA
NTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGG
GMKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTIAALKTHSSPSLLQDTIKI
EFPYNSRIPDSYIDSASLRIEFYQKVGNAENTEALEAIKQELLDRFGPLPQEVSWLLALA
QVRLFALQHNISSIKGTRNSLSIQQTHGKNELIKQTLPYALSPTPELLIKEVCESIEKAF
PLNTFKQ
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcaacccaattaacttagagctttcttttacccaaaggttgtatcaa
cataccgccccccttctgattgaaaatgtacgtccaggggcattagcgtttttggcagca
aagatgtttcatgatacagcgcaacctattatcatgattaccacccctgcgcgccttgat
gatctgtttgaaaacctctcgacgtttttgcctactctccctgttgagtttccttcatca
gagatagatctttctcctaagttggtaaatattgatgctgtagggaaacgtgattatctt
ctctatacgatacataaaaacactgcgcctctagtatgtgtgactactttaaaagctctt
cttgagaagactctctcccccaaggaaagcgcaaagcgacatttggagcttcatgttggt
gataccttagatcctgaaactacagtagagctgtgtaaagatctcggctatacacaggta
acagtagcaagagaaaaaggggagtttgctcatcgtggggggatcgtagatatctttccc
ttatctgcaacggagccttttcgtatagaattctggggagagaaaattctctccttacga
gcctataatccctcggatcaattatccatagagaaggtttctcagatcttgatctctccc
gtagagaaaatctcctcttcagggacgctctcccatacacttttggactttttttctaca
ccaccgttatgcctttttgatgatctggaaactctagagaacgactttgctgaaatctcc
ggaacgttagcgtctttccctgagcgctttctttcccttgaggggttttttcaaaggatc
tctaacaacaagtctatgtttttctctgaggcatatttccctaatgtgcaaatcaaaaaa
aacgatgctgtaacaatccaagtatttaaccatgctcttgatgttcaaagagtttctctt
cccttgctctatcctaacgaaatcttagaacacaatgaaaaccccctactaagcttccta
cagcgtcttcaagagctcctcccggagcaaaacgcttctctgaaacttgctctctacagc
acaaagacaaagtccttaaaggaagctcgcaccttagctcaacaatttcacaaaacacac
gtatctatttatgaaaactcggggaatctctcgtcgagtttcgccctagttcaggaaggc
tttgtagcaatttccctatcggaatttgcctcaacaaaaatcttaaggcgtcaaaaacaa
cgaaattacttttcagtaacgacagcggaagaggtctatgttccagttcctggggaaaca
gttgtgcatcttcataatgggattgggaagtttgtcggggtggagaaaaaacctaaccat
ctcaacatcgaaacagattacctcgtaatagaatacgcagaccatgccaagctctatgtc
ccttcagaccaggcctaccttatctctcgctatgtaggggcttctgacacccctccagag
tttcataatcttaatggttccaagtggaaacgttctcgagaacttacggaaaaatcttta
gttgcctatgcggaaaagcttcttcagcttgaagcacagcgcagcacaactccggcattt
gtacatcctccacatggggaagaagttatcaagtttgcagagacctttccctatgaggaa
actcctgatcagctcaaagctatagagcagatctatgaagatatgatgtctgaaaagctt
atggacagactcatttgtggagatgcagggtttgggaaaactgaggttatcatgagagct
gcagtaaaagctgtttgtgatggccaccgtcaagtgattgttatggttcccacgacaatt
ttagcacaccagcattatgaaacctttaagcaaaggatggcagggctcccaataaacatt
gcagtaatttcaaggttttcacaaaccaaagagcagaaagtcatcttccaaaaagttgct
gaagggggaatcgatattttaattggaacccataagcttattaataaacacctagaattt
catcatcctgggttgctcatcatcgatgaggaacagcgctttggagtaaaaattaaagag
agtctaaaagagcggtatccaaatatcgactgcttaacagtctctgctacccctatccct
aggacgctatacatgtccctaactggtgctagagatctttctatcatcaccatgcccccg
ttggatcgtcttcctgtaagcactttccttatggaacataatgacgaaactctatctgct
gcattacgccatgagctccttcgcggggggcaagcctatgtgattcataatcggatagaa
agtctatttcgcttagcggagaacatccgtacacttattcctgaagccagaattggagtc
gctcatggacagatgacctcagaagagctagctaagatttttcacaaatttaagacccaa
cagaccaatattttgatcgccacggcaatcatagaaaatggtattgacattcctaatgcc
aatactatcttgatcgaccatgcagataaatttggcatggcagatttatatcaaatgaaa
ggccgcgtaggccgctggaataaaaaggcatattgttattttcttgtccctcatctagat
cggctgtctggtcctgctgcaaagcgcttagcagcactcaacaagcaagaatatggcggg
ggaatgaaaattgccctccatgatctagagatccgtggagctggaaatatcttaggaaca
gatcaatctgggcatatcagcgctataggctttaacttatactgcaagctcctaaagaaa
acgatcgcagcattaaaaacacattccagcccttctcttcttcaagatacgataaaaatt
gaattcccctataactctcgcattcctgattcctatatagattcagcatccttacgaatc
gagttctatcaaaaagtaggaaatgcagaaaatacagaagctttagaagccataaaacaa
gaacttcttgatcgctttgggcctctacctcaagaggtctcctggctactagcccttgca
caggtgcggctctttgcgctacaacacaacatctccagcattaagggaacaagaaactct
ttatctatacagcaaacccatggaaagaatgagctcataaaacaaactctcccttatgcg
ctttctcctaccccagaactattaataaaagaagtctgtgaatctatagaaaaagctttt
cctttaaacacatttaaacaataa
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