Campylobacter peloridis: CPEL_0017
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Entry
CPEL_0017 CDS
T03559
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpel
Campylobacter peloridis
Pathway
cpel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPEL_0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpel03019
]
CPEL_0017
Messenger RNA biogenesis [BR:
cpel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPEL_0017
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AJC83892
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Position
complement(15235..17178)
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AA seq
647 aa
AA seq
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MSEENKTQEQNKPRRFNKFKNKKRKESQNLEQNEAKLENIQNENVEEKKRKKKNRNLPSK
LSGNEEWQVELAKSIQANKIMHELRLHPLKHNNSSEHKIRITPLGGLGEIGGNITVFETN
NDAIIVDIGMSFPDGTMHGVDIIIPDFDYVRKIKDKIRAIIITHAHEDHIGAVPYFFKEF
QFPIYATPLALGMISNKFEEHGLKAERKWFRPITKRQIYEIGDFDLEWIHITHSIIDACA
LAIKTKAGTIIHTGDFKIDQTPIDGYPTDLSRLAQYGEEGVLCLLSDSTNSYKEGYTKSE
SSVGPTFDQIFAKTKGRVIMSTFSSNIHRVYQAISYGLKYGRKVCVIGRSMERNLYTTME
LGYIKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPSDQVI
ISAKAIPGNEANVSAVLDFLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKPKFFLP
VHGEYNHINKHKETALKCGIPERNIYLMSDGDQVELCQKYIKRVKTVKTGKVFVDNQINK
QIADDVVIDRQKLADSGIVVIIAQLDKASKTLINKPRVFSYGLVADKQDGAFSKEMSDVL
SQFFPNVKDEILDNPKVLEAQIRQVLRKHIFRKIKKYPTIVPTIFVM
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaaaacaaaactcaagaacaaaataaacctagaagatttaacaaatttaaa
aataaaaaaagaaaagaatcacaaaatttagaacaaaacgaggcaaaactagaaaatatt
caaaatgaaaatgttgaagaaaaaaagagaaagaaaaaaaatagaaatttaccttctaaa
ttaagtggtaatgaagaatggcaagtagaacttgctaaaagtatacaagcaaataaaatc
atgcatgagttaagactccaccctttaaaacacaataactcaagcgagcataaaatccgt
attacgcctttgggtgggcttggagaaattggtggaaatatcaccgtttttgaaaccaat
aatgatgcgattattgttgatataggtatgagttttcctgatggaactatgcatggggta
gatatcatcatacctgattttgactatgttagaaagataaaagataaaattcgtgccatt
ataatcacacatgctcatgaagatcatatcggtgcagtgccgtattttttcaaagaattc
caatttcctatctatgcgacacctttagccctaggtatgatttcaaacaaatttgaagaa
catggcttaaaagctgagcgtaaatggtttagaccaatcaccaaaagacaaatttatgaa
ataggtgattttgatttagaatggattcacataacccactctatcatcgatgcatgtgcg
ctagctattaaaactaaagcaggaactatcatacacacaggtgattttaagatagatcaa
actccaattgatggttacccaacggatttaagtcgtttagctcaatatggcgaagaaggg
gtgctttgtcttttaagtgatagcacaaactcatataaagaaggttacacaaaaagtgaa
agctctgtagggcctacttttgatcaaatttttgctaaaactaagggcagggtgatcatg
agcacctttagctctaatatccaccgcgtatatcaagctattagttatggtttaaaatac
ggcagaaaggtttgtgtgatagggcgttctatggaaagaaatctctataccaccatggaa
cttggttatatcaaacttgatagaaaaattttcattgacgctgatgaagttagcaaatac
aaagacaatgaagtgcttatagtaactacaggaagccaaggtgaaaccatgagtgcttta
tatagaatggcaactgatgagcataaatttatcaaaatcaaaccaagcgatcaagttatc
atttcagctaaagccataccaggaaatgaagcaaatgtttctgctgtgcttgattttctt
ttaaaagcaggagctaaagttgcttatcaagaatttagcgaaattcatgtaagcgggcac
gctagcatagaagagcaaaaacttatgcttactttggtaaaacctaaatttttcttacca
gtgcatggagaatataatcatatcaacaaacacaaagaaactgcactaaaatgtggcata
cctgaaagaaacatttatttaatgagcgatggagatcaagtagagctttgccaaaaatac
atcaaacgcgtaaaaacggttaaaacaggaaaggtttttgtagataatcaaatcaacaaa
caaatcgcagatgatgtggtaattgatagacaaaaactagcagatagcggtatagttgtt
atcattgctcagcttgataaagcaagcaaaacgcttattaataaaccaagagtatttagc
tatggtttggtagctgataaacaagatggagcattttcaaaagaaatgagcgatgtttta
agtcaatttttccctaatgtaaaagatgaaattttagacaatccaaaagttttagaagct
caaattagacaagtgctaagaaagcatatttttagaaaaatcaaaaaatacccaaccata
gtgccaactatttttgtgatgtag
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