KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111776758
Entry
111776758         CDS       T05351                                 
Name
(RefSeq) coatomer subunit alpha-1-like
  KO
K05236  coatomer subunit alpha
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cpep04131]
    111776758
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpep04147]
    111776758
Membrane trafficking [BR:cpep04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    111776758
Exosome [BR:cpep04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   111776758
  Exosomal proteins of bladder cancer cells
   111776758
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_1st EIF3I TPR_COPA_B Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_At4g14310 ThaI Zn_ribbon_19
Other DBs
NCBI-GeneID: 111776758
NCBI-ProteinID: XP_023511871
LinkDB
Position
LG16:complement(4678293..4683765)
AA seq 1218 aa
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH
KSQPLFVSGGDDYKIKVWNHKTHKCLFTLLGHLDYIRTVQFHHECPWIVSASDDQTIRLW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDVLR
LSQMNSDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFAISGDSLFYIKDRFLCFYEFSTQKDTQVTPIRRPG
STSLNQSPRSLSFSPTENAVLICSDLDGGCYELYTIPRDSFGRGDNVQDAKRGTGGSAVF
VARNRFAVLDKSNNQVLLKNLRNEVVKKTPLPITTDAIFYAGTGNLLCRAEDKVVIYDLQ
QRIVLGDLQTPFVKYVIWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGGWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTLFCLDRDGINQRFIIDATEYI
FKLSLLRKRFDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFDRLSFLYLITGNTAKLSK
MLKIAEVKNDVMGQFHNALYLGDVRERVKILESVGHLPLAYITASTHGLHDVAERLAAEL
GDNVPSLPEGKAASLLLPPTPVICAGDWPLLRVMKGIFEGGLDNVGGGPADDDEEVADGD
WGEELEVVDVDGLQNGDVAAILEDGEGAEENEEEGGWDLEDLELPPEADTPKVSVSARSS
VFVAPTPGLPASQAWIQRSSLAAEHVAAGNFDTAMRLLNRQLGIKNFAPLRTMFLDLHAG
SQTYIRALSSVPILTLAVERGYNESGNANAKGSPALIFSFSQLEEKLKAGYKATTSGKFA
EALRLFLGILHTIPLIVVESRREVDEVKELIIIVKEYVLGSQIELKRRELKDNPARQMEL
AAYFTHCNLQMPHLRLALLNAMSVCYKAKNLASAANFARRLLETNPPVENQAKTARQVIQ
AAERNMKDSHQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCTVCDL
AVVGADASGLHCSPTQVR
NT seq 3657 nt   +upstreamnt  +downstreamnt
atgttgacgaagttcgagaccaagagtaatagagtcaaaggactgagtttccatactaag
aggccatggatccttgcaagtcttcacagcggagtgatccagctatgggactatcggatg
ggcacacttattgatagatttgatgagcatgaggggcctgttcgcggcgttcactttcac
aagtctcagcctctatttgtttccggaggggatgattacaagattaaagtatggaaccat
aagactcataagtgtctgtttactcttcttggacatcttgattacatccgtactgtgcaa
tttcaccacgagtgtccgtggattgtgagtgctagtgatgatcagactattcgtttatgg
aactggcagtcacgcacttgcatttctgtgttgactggccataaccactatgttatgtgt
gcttcgttccatcccaaggaagatcttgttgtgtcagcttctcttgatcagacagtgcgt
gtatgggacattggtgcattaagaaagaagacagtatccccagccgatgatgtgcttcgg
ttgagtcagatgaattctgatctctttggtggtgttgatgctgttgttaaatatgttttg
gaaggtcatgaccgaggagttaattgggcagctttccatcctaccttgccgttaattgtg
tctggtgccgatgatcgtcaagtgaaattgtggcgaatgaatgatacgaaggcatgggaa
gtggacacactaagggggcacatgaataatgtttcgtgtgtaatgttccatgcaaaacaa
gacattattgtctccaattcagaggataaaagtattcgtatttgggatgcaacgaagcgg
actggacttcagactttccgtcgcgagcatgaccggttctggatacttgctgctcatcct
gagatgaatctactcgcagctggtcatgacagtggcatgattgtttttaagttggagagg
gaaaggcctgcatttgctattagtggtgattctctattttatataaaggaccgttttctg
tgcttctatgagttttcaactcaaaaagacacccaagtaaccccaattcgaaggcctggt
tccactagcttgaatcagagccctaggagtctctcttttagccccacagaaaatgctgtt
cttatttgctcggatctagatggggggtgctatgaactgtacaccattcctagagatagc
tttggcagaggtgataacgtgcaagatgccaagagaggaactggaggctcagcagtattt
gtggctcggaataggtttgctgtgcttgataaaagcaacaaccaagtcttattaaaaaat
cttaggaatgaagttgttaaaaagactcccctacccataaccacagatgcaatcttttat
gctggaactggtaacttattgtgtagggcagaggacaaagtagttatatacgatcttcag
cagagaattgttcttggtgatctgcaaacccctttcgtgaaatatgttatatggtccaat
gacatggaaagtgttgccttactcagtaaacacgcaattattattgcaaataagaagctt
gtacaccagtgcactcttcacgagacaattcgtgtaaagagcggaggatgggatgataat
ggggtctttatttatacaactttaaaccacataaaatactgccttcccaatggagatagt
ggtataatcagaacccttgatgttccaatatatattacaaaggtttctggcaacacactc
ttttgcttggatagggatgggataaatcagcgtttcattattgatgcaacggaatacata
ttcaaactctctctgttgaggaagagatttgaccatgtcatgagcatgataaggaactca
cagctctgtgggcaagcaatgattgcatatttgcaacaaaaggggtttcctgaagttgca
cttcactttgtgaaggacgagagaacccggttcaatttggctcttgagagtggaaacatt
cagattgcagttgcatctgctacagcaattgatgagaaagatcattggtataggctgggt
gtggaggctcttcgccaaggcaatgcaggcattgtggaatatgcctaccagaagacaaaa
aattttgataggttatcattcctttatctcataactggtaacacagcaaaactgtccaag
atgttaaagattgctgaagttaagaatgacgtcatgggtcaatttcataatgctctatat
ctcggtgatgtccgggagcgtgtaaagatcttggagagtgttggccacttacctcttgct
tatatcaccgcatcaacccatggtctacatgatgtagctgaaaggttagctgctgaattg
ggagataatgttccatctttacctgaaggaaaagcagcatcgctgttattgccccctact
cctgttatatgtgctggtgactggccacttctgagagtgatgaaaggaatatttgaaggt
gggctggataatgtgggtggtggtcctgcagatgatgatgaggaggttgcagatggtgat
tggggtgaggagctggaagtggttgatgtcgatggcttacagaatggggatgtggcagca
attttggaggatggggaaggtgcagaagaaaatgaggaagaagggggatgggaccttgaa
gatttggagctcccacctgaagctgatactccaaaagtatcagtcagtgctcgtagttcg
gtttttgtggccccaacacctggcttgcctgccagccaggcttggattcagcggtcatcc
ctcgctgcagaacatgttgctgctggtaattttgatactgcaatgcggctgcttaacagg
caactaggaattaaaaactttgctcctttgcgaaccatgtttctggatcttcatgctgga
agtcaaacctacattcgcgctctttcatctgttcccatactaacattggcagtagaacga
ggatacaatgaatctggtaatgcaaatgcaaaaggatcccctgcacttattttcagtttc
tctcagttggaagagaagcttaaagctggttataaagccacaacatctgggaagtttgct
gaggctcttcgtctctttctcggcattcttcataccattcctctgattgttgtcgagtct
aggagggaagtcgatgaggtgaaggagttgattattatcgtcaaagagtatgttctgggt
tcgcaaatagagcttaagaggagggaacttaaggacaatcccgcccgtcagatggagctt
gcagcctattttactcactgtaaccttcaaatgccacacttgagacttgctttattaaat
gctatgtcagtctgctacaaggcaaagaaccttgccagcgccgcaaactttgcccggagg
ctgctagaaaccaatcccccagttgagaaccaagcaaagacagccaggcaagtgatacag
gctgcagagaggaatatgaaagattcacatcaactgaactatgattttagaaaccctttc
gtgacctgtggagcgacttatgtgccaatctatcgaggacagaaggacgtctcgtgccca
tactgtagctccaggtttgtgccaagtcaggaagggcaactctgtaccgtgtgtgatctt
gctgttgttggggccgatgcatctggtttacattgttctcccactcaagttcgatga

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