Cucurbita pepo subsp. pepo (vegetable marrow): 111777002
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Entry
111777002 CDS
T05351
Name
(RefSeq) putative axial regulator YABBY 2 isoform X1
KO
K25796
plant-specific transcription factor YABBY family protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpep03000
]
111777002
Transcription factors [BR:
cpep03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Yabby
111777002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YABBY
YABBY_N
HMG_box_2
HMG_box
Ccdc124
zf-LSD1
Zn_ribbon_Com
Zn_ribbon_12
Motif
Other DBs
NCBI-GeneID:
111777002
NCBI-ProteinID:
XP_023512204
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Position
LG16:complement(7999236..8002376)
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AA seq
176 aa
AA seq
DB search
MSLEMMAAERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPP
QDSPPGNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQ
RVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggagatgatggcagcagaacgtgtttgttatgttcactgcaacttctgcaat
accattttagcggtaagtgttccatgcaacaacatgttcacactggtaactgtgagatgc
ggccattgctcaaatctgctgtctgttaacatgggagcttctcttcaagttcttcctcct
caagattccccaccgggtaataaacagcagcaggtgagtggtggggattggagcaaggac
agaggctcttcttcttcttcctcttcttcctcttcaaaatgcactaaaattgcctctctt
gattctgctgaacgtgaccaacacagaatccctccaattcgcccaccagagaagaaacag
cgtgttccttcagcatataataggttcatcaaagaggaaatccaaaggattaaggcgaac
aatcccgacattagccacagagaagcctttagcaccgccgctaaaaattgggcacattat
cctcacatccgttgtgggcagaaggtggatggaaacaagcaaacaaaataa
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