Cucurbita pepo subsp. pepo (vegetable marrow): 111777225
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Entry
111777225 CDS
T05351
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111777225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111777225
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111777225
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
111777225
NCBI-ProteinID:
XP_023512527
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Position
LG01:complement(16982303..16994603)
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AA seq
969 aa
AA seq
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MRGRKQSQRPKNSSGVEDAGEAVPDPGGGCSQSSDGRGTLVDVSRAAVGKLLSRATGRRL
SGTKKHALQPCDLVRKPKCKDGRDVNSIMDTKEMLETEKCNENVIANSSGDVNVHEAQLQ
NSPSHVLEDLDDSDWEDGAAGTMDGTGSYPMTIEFSETQHDSIRRKPIRRASAADKEIAE
LVHKVHLLCLLGRGRLIDGACNDPLIQSALLSLLPIHLLKNTPAKQLTASSLKPLVSWLH
NNFHVRNQIRSEGSINAALARALETHEGTAEEIAALTVVLFRALDLTARFVSILDVASIK
PEAERSNYFSEGTSVSSSNIFKNSTLMVDKAEQVDRSSLTSTSGGNCASNAINLSGKKTF
VLDELSCTTSSGSNSKPDIPETCPSKNSQVLKRKGDIEFEMQLQMALSATEVETAPRNSS
TNYSNVPSSKFPSPKKLKRIVDEESASSSRGISTAIGSSKVGSPLYWAEVYCNAENLTGR
WVHVDAVNMVVDGEHKVEDLAAACKTSLRYVVAFSGLGAKDVTRRYCMKWYKIEKKRIDT
LWWDSVLAPLRTLEARATGGTGFLENGCNDDLIEHNQVKMSGLSENLKQKTFASDDNLAG
NSDHNVSEELDTDRNSSLGNQFVATKDYLEDIELETRALTEPLPTNQQAYKNHRLYALEK
WLTKYQTLHPKGPVLGFCSGHPVYPRTCVQTLQTKQKWLREGLQVKSNELPAKELKRSLK
KIKVRESETDDFDQGDSQGVIQLYGKWQLEPLQLPRAINGVVPKNERGQVDVWSEKCLPP
GTVHIRLPRVFNVAKKLEIDYAPAMVGFEFRNGRSYPIYDGIVVCSEFKRVILEAYAEES
ERREAEERRQREKQAISRWYQLLSSILTRQRLNSRYGDDENPSQQVVTEIRGTNDKGNVD
IPSCKDDTEPVECQLQQNNVSKANIDAPSFVNQEDHKHVFLLEDQTFDEKSLVLTKRCHC
GFSIQVEEL
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggccgaaaacagtcacagcgccccaaaaattcttcaggtgtagaagatgctggt
gaggcagtaccagatccaggaggaggctgttcacagtccagtgatggcagaggaacttta
gtcgatgtttcaagggctgctgtgggcaagcttcttagtcgtgcaaccggacgtcgcttg
tcaggaacaaagaaacatgctctgcagccatgtgatttggttagaaagccaaaatgtaaa
gatgggagagatgtaaattcaattatggacacgaaggagatgttagagactgagaagtgc
aatgaaaatgtaatagcaaactcctccggggatgttaatgttcatgaagcacaattgcag
aattctccttcgcatgttttggaagacttggatgattcagattgggaagatggtgctgct
ggcactatggatggaacagggtcttatccaatgaccattgaattcagtgagacgcagcat
gactctataaggaggaagcctattcgtcgagcttctgctgctgataaggaaattgcggag
ttagtgcataaggttcatttgctttgcttacttggacggggaagattaattgacggagct
tgcaatgatcctcttattcagtctgctttgctttctctacttccaatacacttgctgaag
aacacaccggccaagcaactgacagccagctctctgaaacccctggtttcttggttacac
aacaattttcatgttagaaaccaaataaggtcggagggttctattaatgctgctcttgct
cgtgctcttgaaacacatgaagggactgcagaggagattgctgcattgaccgtggtgctt
tttagagctttggatctaacagcccggtttgtatccattttggatgttgcttctataaaa
ccagaggctgaaagatctaactattttagcgaagggactagcgtatcaagtagtaacatt
ttcaagaactcaactttgatggtcgataaagcagaacaggttgatagaagttctcttaca
tctacttctggtggtaattgtgcaagcaatgcaatcaatttatcaggaaagaaaactttt
gtccttgatgagttgtcttgtaccacaagttctggcagcaactcaaaacccgatatcccc
gaaacctgcccctctaagaactctcaggtactgaagaggaagggggatattgagtttgaa
atgcagttacaaatggctctttcagctacagaagttgagactgcacctagaaattctagc
acaaattactcaaacgtgccttcttcaaagttcccttcaccaaaaaaactgaaaagaatt
gttgatgaagaatctgcctcttcttcccgtggaatctccactgctattggttcaagtaaa
gtaggatcgcccttgtattgggcagaagtatactgcaatgcagaaaacttgacgggtagg
tgggtacacgttgatgctgtaaatatggttgttgatggggagcacaaagtagaggattta
gctgctgcatgcaaaacatctttgagatatgtggttgccttttctgggcttggtgctaaa
gatgtgactcgcagatattgtatgaagtggtacaagatagaaaaaaaacggattgatact
ctttggtgggacagtgtattggcaccattaaggacacttgaagcacgagccacggggggt
actggtttcttggagaatggctgcaatgatgacttgattgaacacaatcaagtaaaaatg
tcaggtttatcagaaaatttgaagcagaaaacttttgcaagtgatgataacttggcgggg
aattcagatcacaatgtgtcagaagagcttgacactgatcgaaactcttctttgggtaat
caatttgttgcgacaaaggattatctggaggatattgaattagaaactcgggctctcact
gaacctcttccaacaaatcagcaggcctacaaaaaccaccgtttatatgcccttgaaaaa
tggcttaccaagtatcagacgcttcatccaaagggccctgttctgggtttttgttctgga
catccagtttaccctagaacatgtgtccaaacgcttcagacaaagcaaaagtggctgcgt
gaggggctgcaagttaaatccaatgaactacctgctaaggagttgaaacgttccttaaag
aaaatcaaagtacgagagtctgaaactgatgactttgatcagggtgattcccaaggagtc
attcaactctatgggaagtggcaattagagccattgcaattgcctcgtgctataaacggg
gttgtgccgaaaaatgagcgtggtcaagtggatgtgtggtctgagaagtgccttccacca
ggaactgtgcatattagattgcccagggtattcaatgttgctaagaagctggaaattgat
tatgcacctgcaatggttggctttgaatttcgaaatggtcgatcatatcctatctatgac
ggcattgttgtctgttctgagtttaaacgtgtgatattagaggcatacgctgaggaatcc
gagagaagagaggctgaagagagaagacagagagaaaaacaagcaatttcaagatggtat
cagcttctttcatccattttgacccggcaaaggttgaacagtcgttatggggatgatgag
aatccatcacagcaggtggtgactgagattcggggcacgaacgacaagggaaatgtagat
attccttcttgtaaagacgatacagaaccagtcgagtgccagctccagcagaataatgta
agtaaagctaacatcgatgctccatcttttgtcaatcaagaagatcataagcatgtgttc
ttgttagaggatcagacgtttgatgagaaaagtttggtactgacaaaacgatgtcactgt
ggtttttctattcaagtggaagaattatag
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