Cucurbita pepo subsp. pepo (vegetable marrow): 111777360
Help
Entry
111777360 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111777360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111777360
03012 Translation factors [BR:
cpep03012
]
111777360
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111777360
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111777360
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111777360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
AAA_19
Ank_2
AAA_22
Ank_5
ABC_tran
AAA_23
Rad17
AAA_7
PhoH
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
111777360
NCBI-ProteinID:
XP_023512682
LinkDB
All DBs
Position
LG01:3255854..3266318
Genome browser
AA seq
1286 aa
AA seq
DB search
MAKKKQKKGEQKPKPKAFADADSEITQALERFCLSNDEVFTFEADLSKRERALVHEECRK
MGLTSKSYGRGDQRRVSIYKSKPQKDTMKFSEKTKSVLDDLFSSYPPDDGELGKETIGKS
KKKAHKPSRKKDDIFWRPSMNKEEIMKKVESYTTRVKSVANLKKISGDRSKLPIASFQDV
ITSTVESHQVVLISGETGCGKTTQVPQFLLDYMWGKGEACKIICTQPRRISATSVSERIS
YERGENVGSDVGYKIRLESKGGRHSSIVLCTNGILLRVLISEGLGKLTTEASEKSRKNVV
SDLTHIIVDEVHERDRYSDFILAILRDLLPTYPHLRLILMSATIDAERFSKYFGGCPIIS
VPGFTFPVKNFYLEDVLSIVKSSEENHLDDSTVGASDEETELTEEDKLSLDEAIHLAWLN
DEFDPLLELVASEGSSQIFNYQHSVTGLSPLMVLAGKGRVSDVCMLLSFGAMCELQAKDG
MTALEMAERGEHKETAEAIRKHLESSMSNSKEEQRLIGKYLARNSNSVDVALIDLLLGKI
CLDSKEGAILVFLPGWDDISKTRERLSINPIFKDASKFLIISLHSMVPSKEQKKVFKRPP
PGCRKIILSTNIAETAITIDDVVYVIDSGWMKEKSYDPYSNVSTFQSSWISKASAKQREG
RAGRCQPGICYHLYSKFRASSLPDFQVPEIKRMPIEELCLQVKLLDPNCRIEDFLQKTLD
PPVFDTIRNAILVLQDIGALSHDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLEPALT
LACASDYKDPFTLPMLPSERKKAAAAKAELASLYGGHSDQLAVVAAFDCWKNAKRRGQEA
RFCSKYHISPSTMSMLFGMRRQLEMELVQNGFIPEDISTCSLNARDPGILHAVLVAGLYP
MVGRLLPPQKKGKRAVVETGSGGRVLLHRQSLNFELSHKLTDYCPLIVYDEITRGDGGTH
IRNCTVVGPLPLLMVAKEIAVAPAKENDNGKGDIVNDTDGNDEAGVVETVEDKMDIENKP
NEQPEEMIMSSPDNSVTVVVDRWLYFWSKALDIAQLYCLRERLSAAILFKVKHPNKILPP
VLGASMHALACILSYDGLTGISLESVEMLTSMVDATEISNFVPGRSNETHKKVSSFHRSL
SNYNDFTVPESSGTSNLNHPFSQNFLPPPDFRAANPSDPSSPNFRAFPNSVYARSTLQPH
REQEHPQPAKPFQDQNATQQQHAPEHKTRKQRKSRRERKAAQQQKHPQLQKPPSGEPSLN
GYGLSTYGPYGLRGISLKRPRGNGAG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaagcagaagaagggggagcaaaagccgaaacccaaggcatttgcagac
gcggacagtgaaattactcaggcactcgagcggttttgcttgtccaatgatgaagttttc
acttttgaagctgatctttctaagcgtgaacgtgctctcgtgcatgaagaatgcaggaaa
atgggtttgacatcaaagagttatggacgtggagatcaacggcgtgtttctatatataaa
tccaaaccgcaaaaagacaccatgaaattttctgaaaaaaccaaaagtgttttggacgat
ttatttagttcatacccacccgatgatggagagttgggcaaggaaacaattgggaaatcc
aagaaaaaggcccataaaccaagtcgaaagaaagatgatattttctggaggccatcaatg
aacaaggaagagataatgaagaaagtggaatcatatactactagagtgaagagtgttgca
aatctgaaaaagatatcaggagatagatccaagcttccaattgcatcctttcaagatgtc
attacttcaacagttgaatcgcaccaggtcgttctcatatctggcgaaactgggtgtgga
aagacaacgcaggttcctcagtttcttttggattatatgtggggtaagggagaggcatgt
aagataatctgtactcaacctcggcgaatatctgcgacatcagtttctgagcgaatctcc
tatgaaaggggagaaaatgttggaagtgatgttggatacaagatacggttggaaagtaaa
ggtggcaggcactcatcaattgtactctgcacaaatggtattctgttaagggtgctgatt
tctgaagggttgggaaaattaactacggaagcttcagaaaaaagtaggaaaaatgttgtg
tctgacttaactcacattattgtggatgaagttcatgaaagggatcgctactctgatttc
attctagcaattttgagagacttgcttcctacatatcctcatctacggctgatactaatg
agtgctactattgatgctgaacggttttcaaaatattttggtggctgtccaatcatcagt
gttcctggattcacgtttcctgtaaaaaatttctaccttgaggatgtgctatctatagtg
aaatcttcggaagagaaccaccttgatgatagtacggtgggtgcttcagatgaagaaact
gagctaacagaagaagacaagctttctttggacgaagcaattcacttggcttggttgaat
gatgaatttgatccccttctagaattggttgcttctgagggatcctctcaaatttttaat
tatcagcattctgtgacgggcttatcacctctaatggtgcttgctggaaagggtagagtt
tccgatgtttgcatgctgctatcttttggtgcgatgtgtgaattacaggccaaggatggc
atgactgcgttggaaatggctgagcgaggagaacataaagaaactgctgaagcaatcaga
aaacatttggaaagttccatgtccaactccaaggaagaacaacgattgattggtaaatat
cttgcaagaaattctaattctgttgatgttgctcttatagacctgctgttagggaaaata
tgtcttgattcgaaagaaggagctattcttgttttccttcctggatgggatgatatcagc
aagactcgggaaagactttcaatcaaccctatcttcaaggatgcatcaaaatttttaata
atatctcttcattcaatggttccttctaaagagcaaaagaaggttttcaaaagaccacct
cccggttgccgcaaaattattctgtccactaatattgctgaaacagccattaccattgat
gatgtggtttatgttatagacagtggatggatgaaagaaaaaagttatgatccttacagt
aatgtttctacttttcaatcatcttggatatcaaaggctagtgccaagcagcgtgaggga
cgagcaggtcgctgccagcctgggatatgctatcatctctattcaaaatttcgtgcatct
tctcttcctgattttcaagttcctgaaattaagagaatgccaatagaggaactttgtttg
caggtgaaattgcttgatccaaattgtaggatagaggatttcttgcagaagactttggac
cctccagtttttgatactatccgtaatgcaatattagtccttcaggatattggggctttg
tcacacgatgagaaactgactgagcttggggagaaattaggctctttgcctgttcatcca
gtaacaagcaagatgcttattttcgctatattgatgaactgcctcgagcctgctctaact
ctggcatgtgcttctgactacaaggaccctttcactcttcccatgttaccaagcgaaaga
aaaaaggctgctgcggctaaagcagagcttgcttctttgtatggtgggcatagtgatcaa
ctggctgtggtagctgcatttgattgctggaagaatgccaaaagaaggggtcaagaggcc
cgcttctgttctaaataccatatctctccgagcactatgtctatgctttttggcatgcgg
agacaactcgaaatggaactagttcaaaatggttttatacctgaggatatttcaacttgc
agcttgaatgctcgtgaccctggcatactccacgctgtccttgtggctggtttatatcca
atggtgggaagattacttccacctcagaaaaagggaaaacgagctgttgtagaaactggt
tcggggggtagagttcttttgcaccgacagtcccttaactttgaactgtcacacaagcta
acagattattgccctctaattgtttatgatgagataacccgtggggatggtggtacacat
ataagaaactgtactgttgtcgggcctctcccattattaatggttgcaaaggagattgct
gttgcccctgcaaaggagaatgataatggtaaaggtgatattgtcaatgataccgacggc
aatgatgaagctggtgttgttgaaactgttgaagataaaatggatatagaaaataaacca
aatgaacaaccagaagagatgattatgtcctcccctgataactcagtaactgtggttgtt
gaccgttggttatacttttggtcaaaggcacttgatattgctcagttatactgcttgaga
gagcgattatctgcagccatcttattcaaagtaaagcatccaaacaaaattcttcctcct
gttcttggggcctccatgcacgccttagcttgcattctatcttatgatgggttaactggt
atatcattagaatcagtagaaatgttgacgtcgatggtagatgcgactgagattagcaat
tttgtacctgggaggtccaatgaaacacacaagaaagtaagttcgtttcatagatcactt
tcaaattataatgattttactgttccggaatcaagtggaacatcaaatttaaaccatccg
ttcagtcagaattttttaccaccgcctgattttagagcagcaaacccaagtgacccatca
agccctaattttagggctttccctaattcagtctatgcaaggtcaacactgcagccacat
agagagcaggagcatccccagccggccaaaccctttcaagaccaaaatgctacccagcag
cagcatgctccagagcacaaaacacgtaaacagagaaagtcccgcagggagcgcaaggca
gctcaacaacagaaacatccccaactgcagaagcctccatcaggagaacccagtttaaat
gggtatggattaagcacgtatggaccatatggactccggggcatttctttaaagcgacca
cgtggtaatggggcgggataa
DBGET
integrated database retrieval system
