Cucurbita pepo subsp. pepo (vegetable marrow): 111777862
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Entry
111777862 CDS
T05351
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111777862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111777862
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111777862
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
111777862
NCBI-ProteinID:
XP_023513357
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Position
LG16:5500865..5504822
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AA seq
477 aa
AA seq
DB search
MQTDSGKLFVGGISWDTDEDRLKEYFSAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA
DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS
VFTPFSSGYGMGVNFEIGLNPGYGGSSNFTNNLNYGRGLSPYYTGNSDRFGNIGYESGNG
GNSSFFSSATQNLWGSGGLNNGTNSANSNAHLGSASVGGGIGGTAFANSGVNWGSSGILS
QGGGNNVFSNSGNHNYGGIDSSYSIGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYN
ASYGDLTWRSSNFERDVSGPFGYGLGNAASDVSSRSSPGFIGGHSVNRRQSNRGNTT
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactgatagtggcaaattatttgttggtgggatatcttgggatactgatgaagac
cggcttaaagagtacttcagtgcctttggggaggttgtagaagctgtcattatgaaggat
cggactacaggtcgaggtcgaggcttcggcttcatagtttttgctgatccaagtgttgca
gatagagttataagggagaagcataatattgatggaagaatggttgaggcaaaaagggct
gttcctagaaatgaccagaacattgtaggtagaaccagtggtagcattaatgtttctcct
ggtcctggacgaactagaaagatatttgttgggggcttagcatctactgttacagagagt
gaattcaagaattattttgatcaattcggaacaattacagatgttgtggtgatgtatgac
cacaatactcttcgacccagaggtttcgggtttattacatatgattcggaagaagcggtc
gagaaagttcttatcaagactttccatgaattgaatggaaaaatggttgaagtcaagcgt
gcagttccaaaagagttgtcaccaggcccaagccgaagtccacttggtggatacaattat
ggtcagagtagggtcaatagcttccttaatggttatactcaggggtatagttcaagtaca
attggaggttatggggttagaatggatggtagatttagtccagtttctagtggtcgaagt
gtattcactccgttcagttcgggttatggaatgggcgtgaactttgagattggcttgaat
ccagggtacgggggaagttccaattttaccaataatctcaattatggacggggactgagc
ccgtattatactggtaattcggatagatttggcaatatagggtatgagagtggcaatgga
ggaaactcatccttcttcagctcagcaactcaaaacttgtggggaagtggagggctcaac
aatggaacaaactctgccaactccaatgctcatttgggatcagcaagcgttggcggcggc
attgggggaactgcatttgccaattctggagttaactggggtagctccggaatcttgtct
caaggtggaggaaacaatgtttttagtaactctgggaatcataattatggaggtattgac
agtagttatagtataggagctggaggatatgggaggaacagtggtactgttttgcctcca
acatcatcatttcctacctcaactgtcggttttgacgggccttttgcagatttctacaat
gccagttatggcgatctcacgtggcgatcttccaattttgaaagagacgtctctggaccc
tttggttatggactcggcaatgctgcttctgatgtctcatccagaagctctcctggtttt
attggtggtcatagtgttaataggaggcagtcaaacagaggaaacactacctag
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