KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111778130
Entry
111778130         CDS       T05351                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020  RNA polymerase
cpep03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111778130
  09124 Replication and repair
   03420 Nucleotide excision repair
    111778130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpep03021]
    111778130
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111778130
Transcription machinery [BR:cpep03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     111778130
  RNA polymerase III system
   RNA polymerase III
     111778130
  RNA polymerase I system
   RNA polymerase I
     111778130
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111778130
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 111778130
NCBI-ProteinID: XP_023513561
LinkDB
Position
LG17:6997675..7002274
AA seq 206 aa
MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
LKRGQVVKIIRPSETAGRYVTYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggtgctagcagaggaggaaatcaccaggcttttcagagttcgaaaaactgtgttacaa
atgcttaaagaccgaggctacttcgttggagactttgaggttgacatgtccagagagcaa
tttaagaataaatatggtgaaagcatgaaacgagaagatatcgtgatcaacaaagcgaag
agaaatgatagctctgatcagatatacattttctttccagaagaaccgaaggttggtgtc
aagacaatgaaaacgtataccaaccgcatgaaatcggagaatgtttttagagcaatattg
gtcgttcaacagaatttgacccctttcgctcgcacctgtataagtgaaatatctaccaaa
ttccacttggaagttttccaggaagcagaattactagttaatatcaaagatcacgttctt
gttcctgagcaccagttactttccaatgaagagaaaaaaacactactggagcgatatacc
gtgaaagaaacacagctaccgcgcatacaggtgaccgacccagttgcgagatactacggg
ctaaagcgtggacaagttgtgaagatcatcagaccaagtgagactgcaggaagatatgta
acttacagatatgttgtctga

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