Cucurbita pepo subsp. pepo (vegetable marrow): 111778180
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Entry
111778180 CDS
T05351
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111778180
09123 Folding, sorting and degradation
03018 RNA degradation
111778180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111778180
03041 Spliceosome [BR:
cpep03041
]
111778180
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111778180
mRNA degradation factors
5'-3' decay
Lsm complex
111778180
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111778180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
111778180
NCBI-ProteinID:
XP_023513637
LinkDB
All DBs
Position
LG01:complement(5213280..5221402)
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AA seq
92 aa
AA seq
DB search
MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgagtattggtggtgaaaaaggttctgtgtcaacaaagacaccagcggactttctcaaa
tcaattcggggccgtcctgtagttgtgaaactcaattctggtgttgactaccgaggtatt
cttgcctgtctggatggatacatgaacatagcaatggagcagaccgaagaatacgtaaat
gggcagttgaaaaacaaatatggcgatgctttcatccgtggaaataacgttctgtacatc
agtacttcgaagaggacattagcagaagggtcttcttag
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