Cucurbita pepo subsp. pepo (vegetable marrow): 111778221
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Entry
111778221 CDS
T05351
Name
(RefSeq) flap endonuclease GEN-like 1 isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111778221
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111778221
BRITE hierarchy
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GFIT
Motif
Pfam:
XPG_I
XPG_N
Chromo_2
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
111778221
NCBI-ProteinID:
XP_023513684
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Position
LG17:2259587..2264618
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AA seq
602 aa
AA seq
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MGVGGNFWDLLKPHARTEGFDFLRNKRVAVDLSFWIVQHETAIKASVRSPHLRLTFFRTI
TLFAKFGAFPVFVIDGTPSPLKSKARIARFFRLSGIDTHDLPRVEDRISVDRNSKFAKCV
KECVELLELFGVPVLEAKGEAEALCAELNRKGFVDACITADSDAFLFGAKCVIKSFHPNS
KEPLECYFMSDIEAALGLKRKHLIAISLLVGNDHDLNGVQGVGLDTAVRFVQDYTDDDIL
NKLHEIGKEDNTSLQGGQSSDTNSRKVKCSHCSFCGHPGSKRDHVKFPCEYCDVSHGSCC
IKKPDGFKCNCSSCDTDREEKEKKKQENWRLRVCNKIAMEPNFPSSELIQMYLCDNHSYF
SDDDLILSWESPKTEILIDFLVFHLRWEPSYIRQRLLPMLSTIFLREMANNPIQTLLYDQ
YEFDSILREKIRYGHPFYVVKWKRAIPVLDNVVYEGSSEGHGTGPEDAIDVDEPVDLTDE
SDSPKIHIQEGCSFLLTDENMDLVRAAYPEQTAKFLQEKEVKRQKTPTTTPPSEASGKSD
SLKAKGAQLSITEFYRATKTQQQTAETTDLTNEGEETSTEKRKASSSSSTLSKSVRRRLL
FD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgggagttggaggcaatttctgggatttactgaaacctcatgctcgaactgagggcttc
gatttccttaggaacaaacgggtcgccgtcgacctctctttctggatcgtccagcacgag
accgccattaaagccagtgttcgaagccctcatttgaggctcacattcttccgcaccatc
actctctttgctaagtttggtgcgtttcctgtgtttgtaattgatggaactccttcaccc
ttgaaatccaaggcaaggatagcaagattttttcggctatctggtattgatactcatgat
ctgccaagggttgaagatcgcatttcagttgacaggaatagcaagtttgcaaaatgtgtt
aaagaatgtgtggaactgctcgagctatttggggtgcccgtcttagaagcgaaaggagaa
gccgaagctctgtgtgccgagttgaatagaaaaggatttgtggatgcctgcatcacagct
gacagtgatgcttttctgtttggcgccaaatgtgtcattaaaagcttccatcccaattca
aaagaaccacttgaatgctacttcatgtcagatattgaagctgctcttgggttaaaaagg
aaacacttgatagctatatctctcctggttggaaatgaccacgacttaaatggcgtgcaa
ggagttggactggataccgctgttcgtttcgtacaagattatactgatgatgacatttta
aacaaattgcatgaaataggaaaggaggataatacgagtcttcagggtggacaatcttcg
gatacgaactcgagaaaggttaagtgttctcattgttccttctgtggtcatccaggcagc
aaaagagaccatgttaagttcccttgtgaatactgtgatgtgagtcatggaagttgttgc
atcaaaaaacctgatggatttaaatgcaattgttcctcttgtgatacggatcgagaagag
aaagagaaaaagaagcaagaaaattggcgactacgagtttgcaacaagattgctatggag
cccaactttcccagtagtgaacttattcaaatgtatctgtgtgacaatcatagttatttt
agtgatgatgaccttatcttatcttgggaaagcccgaaaactgaaattctgattgatttt
ttagtttttcatttacggtgggagccatcttacattcgtcagaggttgcttcccatgcta
tccaccatttttctcagagaaatggctaataatccaattcaaactttgttatacgaccag
tacgagttcgattctatacttagagaaaaaataagatatggacatccattttatgtcgtc
aaatggaaaagggccatcccagtgctcgacaatgttgtatacgaaggctcttcagaggga
cacggcaccgggccagaggatgccattgatgtcgatgaaccagtggatctaacagatgaa
tctgattcacccaaaattcatattcaagaagggtgctcgtttctattgaccgatgagaat
atggaccttgttcgagctgcttatcccgaacaaactgctaagtttttgcaggaaaaggaa
gtgaaaaggcaaaagacaccaaccacgacgccacctagcgaggctagcggaaagtctgat
tcattgaaagcgaaaggtgcccagttaagtattactgagttctaccgtgcaacgaaaacg
caacaacaaacagcagagacaacagatttgacgaatgagggcgaggagacgagtacggag
aagaggaaagcatcaagttcttcttcgacactttcgaagtcggtaaggcgtcgccttttg
ttcgactag
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