Cucurbita pepo subsp. pepo (vegetable marrow): 111778265
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Entry
111778265 CDS
T05351
Name
(RefSeq) protein LHY-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111778265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpep03000
]
111778265
Transcription factors [BR:
cpep03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
111778265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
Filo_VP35
Motif
Other DBs
NCBI-GeneID:
111778265
NCBI-ProteinID:
XP_023513748
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Position
LG17:complement(8032556..8040135)
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AA seq
732 aa
AA seq
DB search
MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHSRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEKEALVKGIPVGQALDIDIPPPRPKRKPSNPYPRKSPISKLGANDGKL
STLVSSSQSKQILDLEKEPMNEATSGEEQATNEKDTHDDNCSEVFTLSGEANSFSLKNQN
SVPVQVKFNDSCAFREFVPSVKEPLHEKGTRKLSELVISSASREKLVSAEKKEALSCALS
GDEMQAAHNYPRNVPVHVVDGSLGANVQGSLRDASLQESAFHPSMEIQGERSILRNPSGS
VSFEHQHNGPGSIYQSYPPIHPTPFTLLHPNQEHYKSVLQMSSAFLNLIVSTLQQNPAAH
AIASLTATCWPYVNPETSADAPTCDTEGFKTKQMNPTPSKEAIAAATVAAATAWWAAHGL
PPLCSPLHSAFTSAAISAPVVQSSDACPNSESKDKAESSLQNAALQNPQLDAEQSEVLTA
HQSGSKSPTHSSSDSGNGGADANATVKPVHNEKTPAEVEFHDSNEEKRGKQVDRSSCGSN
TPSGSDREIDATEKNDEKEEDKELETNHPAPESSIRRSRSIGNTSESWKEVSDEVKRGRL
AFQALFTRDVLPQSFSPPYDVESENKENENVEKVSQSVDKDNSGASVLDLNSNTCGTSTS
AIGVNNGEGEFLSIGLGNGTPKVCRTGFKPYKRCSVEAKEKRMTATSSNHSEEGGQKRLR
LDQKASNCCMYF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaattcctctggagaagacttggtttttaagaccaggaagccatatactatt
acaaagcaacgagagcgctggacggaggaggagcacagtagatttctagaggcgctgaag
ctctatggccgagcatggcagagaattgaagaacatattgggaccaaaacagcagtccag
atacggagtcatgcacaaaagttcttttcaaagttggaaaaagaagcacttgttaagggg
attcctgtaggacaagctcttgatatagacattccaccacctcgtcctaagaggaaacca
agtaatccttatccaaggaagtctcctatatcgaagttgggagcaaatgacgggaagctc
tcgactctggtgtcttcttcacagagcaaacaaattttagatttggagaaagagccaatg
aatgaggctactagtggagaagaacaagcaactaatgaaaaggatactcacgacgataat
tgctcagaagtatttaccctatcaggagaagctaactccttttctttgaaaaaccaaaat
tctgtacctgtgcaagttaaattcaatgactcatgtgctttccgggagtttgtgccctca
gttaaagagccactccatgaaaaaggcacgagaaaactttcagaattggtgatttcaagt
gcttcacgcgaaaaattggtgtctgctgaaaagaaagaagctttaagctgtgcactgtct
ggggatgaaatgcaagctgctcataattatccaaggaatgtgcctgtgcatgtggtagat
ggaagcctgggagcaaatgttcaggggtctttaagagatgcttcactgcaggaatccgct
ttccatccatctatggagattcaaggagagcgtagtatacttcggaatccatctggttct
gtttccttcgaacatcaacataatggacctgggagcatttatcaatcatatccacctatt
catcctactccatttaccttacttcaccctaaccaggaacattacaagtcagttctccag
atgtcttccgcatttctgaatcttattgtgtccacccttcaacaaaaccctgcagcccat
gcaatagcaagtcttacagcaacctgttggccctatgtgaatcctgaaacttctgcagac
gccccaacgtgtgatacagaaggttttaaaaccaagcaaatgaacccgacccctagtaag
gaagccattgctgcagcaactgtagcagctgcaactgcgtggtgggcggcccatggattg
ccacctttatgttctcctttgcattctgcctttacgagtgctgctatatcagctcctgta
gtacaatcatcagatgcctgtccaaattccgagtccaaggacaaagcagaaagttcccta
cagaatgctgctttgcaaaatccgcagctggatgcagaacaatcagaggttttgactgct
catcagtcaggttccaagtcacctactcattcatcatctgactctggtaatggaggtgca
gatgcaaatgctacggtgaaacctgtccacaatgagaagacaccagctgaggttgagttt
catgattcaaacgaggagaagagaggaaaacaagtagatcgttcctcatgtggttccaat
acaccatctggaagtgatcgagagatagatgcaacagaaaagaacgatgaaaaagaggag
gacaaagagcttgagacgaaccatccagctcccgagtccagtattcgtcgtagtagaagc
atcggtaacactagtgagtcttggaaggaggtttctgatgaggtaaaaagggggcgtctg
gcctttcaagcactcttcactagggatgtattgcctcaaagtttttcacctccatatgat
gtagaaagtgagaataaggagaatgagaacgttgagaaagttagtcagagtgtagataaa
gataatagtggcgcatcagttttggaccttaacagcaacacttgtggtacttctacatca
gcaataggtgtcaataacggagagggggaatttctctcaattggacttggaaatggaacc
cccaaggtttgtcgaacaggatttaaaccttacaaaagatgttcagtggaggcaaaggaa
aagagaatgacagcaacatccagcaaccacagcgaggagggaggccaaaaaagactacgt
ttggaccagaaagcctcaaattgctgcatgtatttctaa
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