KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111778292
Entry
111778292         CDS       T05351                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111778292
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111778292
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111778292
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     111778292
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 111778292
NCBI-ProteinID: XP_023513826
LinkDB
Position
LG01:1396390..1399911
AA seq 241 aa
MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ
QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKLEYCRG
A
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtttgtgagccctgaaggacttcgcttggacggtcgtcgtcccatggagatgagg
caaatccgagcagaaattggcgccgtttctaaagcagatggttctgctttatttgagatg
ggtaacaccaaagttcttgctgctgtatatggtccaagagaggttcagaataggagtcaa
caaatgagcaaccaagcactggtgcgttgcgagtacaccatggctaatttcagtactgga
gatcgcatgagaaagcccaagggtgacaggcgatcgacagagatatctttagtcattcgc
cagacaatggaggaatgcattctaacacatttaatgcctcgatctcagatagatattttt
gtccaagttcttcaagcagatggaggtaccagatcagcatgtattaacgctgcaactttg
gcactagctgatgctggaattcccatgcgagatattgttacttcctgcagtgctggatac
cttaatagcactcctctgctagatctgaattatgtggaagatagtgctggtggccctgat
gtcactgttggctttctacctaagttggataaagtcactcttcttcagatggattctaaa
ttacctgttgatatatttgagaatgtcatgcaacttgcaatcgagggctgcaaagccgta
gctaattacattcgagaggtaatgttagagagtaccaaaaagctcgaatattgccgtgga
gcatag

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