Cucurbita pepo subsp. pepo (vegetable marrow): 111778444
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Entry
111778444 CDS
T05351
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111778444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111778444
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111778444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
111778444
NCBI-ProteinID:
XP_023514041
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All DBs
Position
LG17:6184484..6188697
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AA seq
318 aa
AA seq
DB search
MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS
SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA
YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSHSRSKSRSRSKSRSRS
SKSPKAKSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDA
SKSPSRSRSKSKSKSPSR
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgagtggccgtgccagcagaacagtgtatgtcggcaatctcccgggtgatattcgtgaa
aaggaagtggaagatttattttataagtatggccgcatagctcacattgatctcaaggtt
ccaccaaggcctccaggttatgcatttgttgagtttgaagatgcggaagatgctcaagat
gccattcgtggtcgtgatggctatgattttgatggtcataggttgcgtgtggagcttgct
catggtggtcgtggtcattcatcttccagtgatcgtcatagtagttatggaggcagccga
ggtggccgtggagtatctcggcgctctgattatcgtgtattagtcacaggattaccctct
tctgcttcatggcaagacttaaaggatcacatgcggcgagctggggatgtttgtttctcc
caagtgttccgtgatggtagtggaaccacagggattgtggattacaccaaccttgatgac
atgaagtatgcaattaaaaaacttgatgactctgagtttcgcaatgcattttctcgggca
tatgttcgtgtgagagaatatgattcaaagaaggatcgctccaggagtcctagccgtggg
cggtcatattctagagagaggacttgtagtcgcagtcgcagtcgcagtagaggccgaagt
aggagcaagagccacagtaggagcaagagccgtagtaggagcaagagccgcagtaggagc
agcaagtccccaaaagctaaatcttcccagcggtcacctgttaaatctcgatcaaggtct
gtttcccctgctcgctctcggtcaaagtcaccatctctttctggatcccgatcaagatcc
agatctccattgcccaatcgtgagaaacgtactagtaaaagtcccaaccggcgtgatgct
agcaaaagccctagcagaagcaggagcaagagcaagagcaagagcccgtcccggtag
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