KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111778470
Entry
111778470         CDS       T05351                                 
Name
(RefSeq) splicing factor U2af large subunit A
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111778470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpep03041]
    111778470
Spliceosome [BR:cpep03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111778470
 Complex B
    111778470
SSDB
Motif
Pfam: RRM_1 RRM_occluded RBD_DEAH11
Other DBs
NCBI-GeneID: 111778470
NCBI-ProteinID: XP_023514084
LinkDB
Position
LG17:complement(1330017..1340039)
AA seq 910 aa
MSTYSCSKQYSRTSAKQSLYNSNDESAARTRPFSFEDIMLRRKNKESAANDGGDTGSHSR
RESIDKHITANRESERHFRHSRGSSLDVQNLPLEESARISSRRKKEETLLKDNMVIRSDR
NNYGSGLTLIGKLKHDTNGKDKRQKYGQENLGWGKNDERSRIDIENETGKRHSRDAAGKD
RREDRGKGKSERESKRKYQHGDDDRNRDRHISKKHDHGKHHDLESKERKEAKILLSSHHE
DSRLKKRRKRSLDHQSKHKKSGSLSPRPPKSSTKLARQKELPLDSHVKKSGRWHSDSDRI
GDFTNSSSSQYRRHSGSTRSGLGGYSPRKRRTESAVKTPPVRSPEKKNEGLDLLPAEKVG
LFSGSVTSNFQPSNPTVSSGISNDPSGGALFSLAMGKSLSGVSSNNLATKTNASVDSIQL
TQATRPMRRLYIENLPHSPSEKAIIDCLNGFLTSSGVNHIEGTQPCISCIIHKDRGQALV
EFLTPEDASAALSFDGSDFSGSILRIRRPKDYVELVTGDLEKSVAVVNKISDVVEDSPNK
IIVAGISNRISSEMLKNIVAAFGPLKAYHFEINNDLNEPCAFLEYVDQSVMPKACAGLNG
MKIGGQVLKVFPAVPIASLERNGCQPCYGIPEHVKPLLQQPTVVLKVNVFNADVLPLLSE
SDINEVLEDIRFECARFGTVKSMNVAKPCTSCVSAEEEYKSICDVTDVEIKHEIQEISTI
VISRNDNDHDDNCPDATYQEQGNYPHNGRHKNEVVEDKLCHMGIKDATCFEDIVCKSASE
TIPRGCCDKQSSPGNELHDVKVAKIIETGSDEKPVLLGDSTTVVADDEKKVLHGMDPMVR
TDSDTSENREKKERNNNLESSFAVGSVFVEFGRLEASCMAAHSLHGRIYDGQEISVEYIP
HDLYHKRFSK
NT seq 2733 nt   +upstreamnt  +downstreamnt
atgagcacatatagctgctcaaaacaatacagtagaaccagtgctaaacagagcctgtac
aactctaatgacgaaagtgcagctcggactaggccattcagctttgaagatattatgctt
aggaggaagaataaagagtcagctgctaatgatgggggtgatacaggtagccattcaaga
agggaaagcatagataagcacattactgccaatcgtgaatcggaaaggcattttcgtcac
agtagaggttcttctcttgatgtccaaaatctcccattggaggaatcagccaggattagc
tcaagaaggaaaaaagaggagacattgttgaaggacaatatggtgatcaggagtgacaga
aataactatggatctggattgacactgataggtaagctgaagcatgacacaaatggaaag
gataaaagacaaaagtatggccaggaaaaccttggttggggaaaaaatgatgagcgatca
aggattgacattgaaaatgaaactggaaagaggcattcaagagatgcagctggcaaggat
aggcgtgaagatcgtggtaaggggaaatctgaaagagaaagtaagagaaaatatcaacat
ggtgatgatgacaggaacagagacaggcacatttcaaagaaacatgatcatggtaaacat
catgacctagaaagtaaagaaagaaaggaagctaaaatattgttaagttcacatcatgaa
gattctagattgaaaaaaagacgaaaaagaagcctagatcatcaaagtaaacataaaaaa
tctggttcactttctccaaggccacccaagtcctcaactaaattagccaggcagaaggag
ttgccattagattctcatgtaaagaagtctggaagatggcattctgatagtgatagaata
ggggatttcaccaacagttccagtagccaatacaggcggcattctgggtcaacaagaagt
gggcttggtggctattcacctagaaagagaagaactgaatctgctgtcaagactccacct
gttcgatcaccagagaagaaaaatgaagggttggatcttcttccagcagaaaaggttgga
ttattttctggttcagttacttccaactttcagccgtcaaatcctacagtctcctcaggc
attagtaatgatccatctggtggtgctctcttttctctagccatggggaaatctttatca
ggggtttcttcaaataatctagcaacgaagacaaatgcttctgttgattcaattcagctg
acacaggcaacccggccaatgaggaggctttatattgaaaacttaccacattctccatct
gagaaagcaatcattgattgcctgaatggttttcttacatcttcaggtgttaatcacatt
gaaggaacccagccatgtattagttgtattatacacaaagatagggggcaagctcttgtt
gaatttcttacgcctgaggatgcttcagcagcactttcatttgatggaagtgacttctct
ggttccattctaaggattcggcgaccaaaggattatgtcgagcttgtaactggtgacctg
gaaaagtcagtggcagtagtaaataaaatcagtgatgttgttgaggactcaccaaataag
attattgttgctgggatctctaatagaatatcatctgaaatgcttaagaatattgttgct
gcatttggacctctgaaggcctatcactttgaaatcaacaatgatcttaatgaaccttgc
gcctttttggagtatgttgaccaatcagttatgcccaaagcttgtgctggtctaaatggt
atgaagattggagggcaagtactaaaagtgtttccagctgttcccattgcatcgttggaa
cgtaatggatgtcaaccgtgttatgggattccagagcatgtaaaacctcttcttcaacag
ccaacagtagtgttgaaagttaatgtgtttaatgcagatgttctccctttactatctgag
tcagatatcaacgaagttcttgaagacattcggtttgaatgtgccaggtttgggacggtt
aaatccatgaatgttgcaaagccatgcactagctgtgtcagtgctgaagaagaatacaag
agtatttgtgatgtcactgatgtggagatcaaacatgagattcaggaaatcagcacaatt
gtgatttcaagaaatgataatgatcatgatgataattgccccgacgctacttatcaggag
caaggtaattaccctcacaatggtagacataaaaacgaagttgtggaggacaaattgtgt
catatgggtatcaaggatgctacatgtttcgaagacatagtttgtaagagtgcatcggaa
acaatccctcgaggatgctgtgacaagcagagcagcccaggaaatgaacttcatgatgta
aaagttgccaaaataattgaaactggctcagatgagaaaccagtgcttctaggtgattca
actacggtggtggctgatgatgagaagaaagttctacatggaatggatcccatggtgaga
acagattctgacacatctgagaacagagaaaagaaggaacgtaataacaatctggagagt
tcatttgcggtggggagcgtttttgttgagtttggtagattggaagcctcatgtatggct
gcgcactctttgcatggaaggatttatgatggacaagagattagcgtcgagtacattcct
catgatctctatcataagaggttttctaaatga

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