Cucurbita pepo subsp. pepo (vegetable marrow): 111778471
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Entry
111778471 CDS
T05351
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111778471
Spliceosome [BR:
cpep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
111778471
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_7
TPR_12
TPR_2
TPR_MalT
TPR_11
UTP6_C
TPR_8
Motif
Other DBs
NCBI-GeneID:
111778471
NCBI-ProteinID:
XP_023514088
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Position
LG17:7322778..7331911
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AA seq
830 aa
AA seq
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MGDSETIVAQTSEFMRYTSAGYVSSGYADSSTNLIPHPGVFLSVITGDFKVTPIYADMSD
GNAYVTDPNSIQQGNHVGEVDEAMVSVGVTDHSQNNAVSENSAMETAEVVSHDSSLNGSV
AAVLDNAFSVENGNAVENTNEASEEQHFVDGSVPPLSAEEDRLWNIVRANSLDFNAWTSL
IEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGV
TYSVDIWLHYCIFTLSTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGR
LAMIYTRILENPNQQLDRYYNSFKELAANRPLSELKSSEEAVLDVQSEAGDQVNGEEGHP
DATEPSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNV
AELDNWHSYLDFIEQEGDLNKVVKLYERCVIACANYPEYWVRYILYMQASDSMDLSNNAL
ARASQVFVKRRPEIHLFSARFKEQNGDIAGARASYQLVHTEISPGLLEAIIKHANMEHRL
GNLEEAYSVYEQAIAIERGKEHSRALPLLYAQYSRFLNLVCKNEGKAREILDKAVEHGEL
SKPLIEALIHFEAIQSAAKRIDYLDSLVEKVIVPNTENASVVSASMREELSSIFLEFLNL
FGDVQSIKKAEDRHAKLFISRKSTSELKKRLADDYLASEKAKMAKSYPSVASPAQSVMGA
YPTGQNQWAASYGLQPQAWPPVAQAQGQQWAPGYTQSASYSGYGSTYTNPPVSTSVSQAS
TYATYPPTYPVQQAYSAQSYAQPTAQATITPSQQPASVAQPYYGSYYMNG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgggggacagtgaaactatagttgcccaaacatctgaattcatgaggtatacatctgct
ggctatgtttcgagtggctatgctgatagcagtacaaatctaattcctcatcccggcgtt
tttctatctgtgatcactggagactttaaagttacacctatatatgcagatatgagtgat
ggcaatgcgtatgttacggatcccaattctattcagcaaggaaatcatgttggtgaggta
gatgaggcgatggtatctgtaggagtgactgaccatagtcagaataatgctgtatcagaa
aattcagcaatggaaactgctgaagtagtcagtcatgattcttctttaaatggaagtgtt
gcagctgtattggacaatgccttttctgttgagaacgggaatgctgttgagaataccaac
gaggcttctgaggaacaacactttgttgatggttctgtacctccattatctgctgaagaa
gatagactgtggaacattgtgagggccaattctcttgattttaatgcttggacttctttg
atcgaagagacagagaaggtggcagaggataacatactcaaaatccggcgagtttatgat
gcctttttagcagaatttcctttatgctatggttattggaagaagtatgcagatcatgag
gcacggtttggttcaactgacaaagttgttgaggtgtatgaacgagcagtgcatggggtc
acctactcggttgatatttggctgcattactgcatattcactcttagtacatatggagat
ccagagaccatcagaaggctttttgagagaggattagcgtatgttgggacagattacctc
tcctttcccctttgggataagtatattgaatacgagtacacgcagcaggagtggggtcga
ctggctatgatatacacacgtatactagaaaatccaaatcaacagttggatcggtattac
aatagcttcaaggagttggctgcaaatcggccattgtcagagttgaagagttctgaggag
gctgtattagatgtgcaatcagaggctggtgatcaagtaaatggggaggaaggtcatcct
gatgccacggaaccatcatctaaaactgtaagtgctggcttaacagaagcagaggagttg
gagaagtatatcgccattagagaagaaatctataagaaagctaaagagttcgattctaag
atcattggttttgaaacagctatcagaaggccctactttcatgttagaccactaaatgtt
gcagagcttgataattggcatagttacttggattttatagaacaagaaggagacttaaac
aaggtggtgaagttatacgagagatgtgttattgcttgtgccaactatcctgaatactgg
gttcggtatattttatacatgcaagcaagcgacagtatggatctttccaataatgccctt
gctcgagcaagccaagtttttgtcaagagacgaccggagatccatttattttctgctcgg
ttcaaggagcagaacggggatattgctggtgctcgagcctcttatcaactcgtgcatact
gaaatttcacctggccttcttgaagcaattattaagcatgctaatatggaacatcgtctg
ggaaacctggaagaggcatactctgtatatgaacaagccatcgccatcgaaagaggaaaa
gaacattctcgtgcattaccgctgttatatgctcagtactcgagatttctgaacttggta
tgtaagaatgaaggaaaagctagagaaattcttgataaggcagttgagcatggtgaatta
tccaaaccgctcattgaggccttgattcattttgaggcaattcagtcagcagcaaagaga
attgattatttagattcattagttgagaaggtcatagtgcccaatacagagaatgcatcg
gtcgtgagtgcttcaatgagggaggagttatcaagcattttcttggagtttctgaatctc
tttggagatgttcagtcaatcaagaaggcggaggacagacatgcaaagctattcatttca
cgtaagagtacatcagaactgaaaaaacgccttgcggatgattatttagcatctgaaaaa
gcaaaaatggccaaatcctatcctagcgttgcttcgccagcacaatctgtgatgggtgct
tatccaactggtcaaaaccagtgggcagctagctatggtttacaaccgcaagcctggcca
cctgttgctcaagcacaggggcaacaatgggcacctggttatacccaatcggcctcgtac
agtgggtatggaagcacatacacgaatccaccagtgtccacatcagtgtcacaagcctcc
acttatgcgacctatcctcctacataccctgtccagcaggcatattctgcacagagttac
gcccaaccgactgctcaagcaacaattacaccatcacagcagccagcttcagtggctcag
ccgtattacgggagttactatatgaatggatga
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