Cucurbita pepo subsp. pepo (vegetable marrow): 111778632
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Entry
111778632 CDS
T05351
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111778632
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111778632
Enzymes [BR:
cpep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
111778632
Protein phosphatases and associated proteins [BR:
cpep01009
]
HAD phosphatases
Fcp/Scp phosphatases
111778632
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111778632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
111778632
NCBI-ProteinID:
XP_023514332
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Position
LG17:7218034..7224684
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AA seq
1257 aa
AA seq
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MGKHTNCVKTQDVEEGEISDTPSVEEITEEDFNKLETAPKLLPSKHSNRETTVWTMSDLY
NNYPTMCRGYASGLYNLAWAKAVQNKPLNEIFLMDADPDDKSNRSSSSPFRNAKEHGNGT
KQEAKLIIDITGDDMNSDNADVEKEEGELEEGEIDMDTEFVEEVVDSKPMLSDSLDTDYQ
EIDLKNKELDDQLKLIHKTLDAVTIDAAQKSFHEVCSQLLSSIETFLELVQGKVVPRKDA
LIQRLYAALRIINSVFCSMNPKEKEECKPHLSRLLSFVKNCNTPLFSPEQIKSVEVKMPS
TDSLDHFPHMRDSAKDVEIHIPNGVKNKDFYSAYATATPHLTSSTKLPSDSMPVGVTVKN
NLNLSSDSLLSGVPNVKGRGPLLPLLDLHKDHDVDSLPSPTREAPTVFSVQKSGHIPVKV
ARAMDGSRVHPYETDAVKAVSTYQQKFGRSSFSMADRLPSPTPSEECDGGGDIGGEVSSS
SIFRSSKASNSYKLAQTVSNSASSISTGLFPNLESSSTKGLISPLNVAPPSSVSNPIAKP
LAKSRDPRLRMVTSEASAMDLNPRTMTSVQNPSVVESAVTVNMRKQKMDVEPNIDAPEMK
RQRIGSQNHAFSASDLRAGSGSGGWLEDTMSAVPRLSSRNQMEIAEANATEKNNVTNNSG
AGNSRGPTISASKEASLPSLLKDIVVNPTMLLSLLKMNQQKQVAAELKLNSSEPEKNAIC
PTAVNPCLGSSPLVNAPALTSGILQQSAGTPSVPSPPVVTVDDVGKVRMKPRDPRRILHG
NSLHKVGSMGNEQLKSVVPAVPNPEGSRDIIPNGHKQEGQGNLRLASSQPLLPDIGRQFT
NNLKNIADIMSVPSPPTSSHNSSSKPVKLDRKDTNAVGSSSIDSKIVATATQAVDMVGPS
RSHGAWGDLEHLFEGYDDKQKAAIQRERARRIDEQKKMFAARKLCLVLDLDHTLLNSAKF
VEVDPVHDEILRKKEEQDREKAQRHLFRFPHMGMWTKLRPGVWNFLEKASELYELHLYTM
GNKLYATEMAKVLDPKGVLFAGRVLSRGDDGDPLDGEERVPKSKDLEGVLGMESAVVIID
DSIRVWPHNKMNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERPEDGTLASSLAVIQRI
HQTFFSHPVLDEVDVRNILASEQQRILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAV
CTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacacaccaactgtgttaaaactcaagacgtcgaagaaggggaaatctctgat
acaccttcagttgaggagatcactgaggaggattttaataagcttgaaactgctcctaag
ctgctgccttccaaacattccaatcgggagactacagtttggaccatgagtgatttgtat
aacaattatcccaccatgtgtcgtggttatgcttctggtttgtacaatttagcttgggcc
aaggcagtgcagaataagcctctcaatgaaatctttcttatggacgccgaccccgacgac
aaatccaaccgctcttcttcctctccttttcggaatgccaaggaacatggaaacggtaca
aaacaagaggctaagctcatcattgacattaccggcgacgacatgaatagtgacaatgcg
gatgtcgagaaagaggaaggtgaactggaggagggcgaaattgatatggatacggagttc
gtagaagaggttgttgactctaaaccaatgttgtccgactctctcgatactgactatcag
gagatcgatttgaaaaataaggaattggatgatcaactcaaattgattcacaaaacattg
gatgctgttacaatcgacgctgcacagaaatcgtttcatgaagtttgctcccaactgctt
agttctatagagacgtttctggaattggtccagggaaaggtagtcccgagaaaggatgcg
ctcattcaacgattgtatgctgctcttcgaataatcaattctgtgttttgttccatgaac
cccaaggaaaaagaggagtgtaagccacatttatcaaggttgctttcttttgttaaaaat
tgcaacactcctcttttttctcctgagcagataaaatcggtagaggtcaaaatgccatct
acagattcccttgaccatttcccccacatgagagacagtgctaaagatgtcgagatccat
atacctaatggggtgaaaaataaggacttttattctgcctatgcaactgctactccacat
ttaacttcttcaactaagttgccttcagactccatgcctgttggggttacggtaaaaaat
aatctaaatctctcatcagatagtttgctatctggcgtacccaatgtaaaaggtagaggt
cccctactccctctgttagaccttcacaaggatcatgatgtggacagtctcccatcacct
accagagaagctcctacagttttttctgtccaaaaatcagggcatatccctgtgaaggtg
gcacgtgctatggatggatcaagagtacatccttatgaaactgatgccgtaaaagctgtt
tcaacctatcaacagaagtttggtcgaagttccttttcaatggctgatcgacttcctagc
ccaaccccttcagaagaatgtgatgggggtggtgatattggtggggaggtttctagttct
tccattttcagaagctcaaaagcttcaaattcttataaactggctcaaacggtgtcaaat
tctgcttctagcatatctacaggtctttttcctaacctggaaagttccagcactaaagga
ctgattagtcctttaaacgttgctcctcctagttctgtgtctaatccaatagcaaagcct
ttggcaaaaagtagagaccctaggctacgaatggtcacttctgaggcaagtgctatggat
cttaatccacgcacaatgacttctgtgcagaatccttctgttgtagaatctgctgtaacc
gtaaacatgagaaagcagaagatggatgtagagcctaatatagatgcccctgaaatgaaa
aggcagaggattggatctcagaatcatgcattttctgcaagtgatttgagagctggctct
ggaagcggtggctggttggaagataccatgtccgctgttcccaggctttcaagcaggaat
cagatggagattgctgaagcaaatgcaacagaaaaaaacaacgttacaaacaattctggt
gcaggaaattcacgtgggcctacgataagtgctagcaaagaagcttccttgccctcacta
ttgaaagatattgttgtgaacccaaccatgctcttaagtttacttaaaatgaaccaacag
aagcaagtagctgcagaattgaaattaaactcgagtgaacctgaaaaaaatgcaatttgt
cctacggccgtgaatccttgtctaggatccagtccactagtaaatgctcctgctctgacc
tcaggaattttgcagcaatcagcaggaacaccaagtgtaccttcaccaccggtggtcact
gtggatgatgtgggaaaagttcgtatgaaacctcgtgaccctcgccgtatcctccatggt
aattctcttcacaaggttggcagcatgggaaatgagcagttaaaaagtgttgtaccagct
gttccaaacccagaaggaagtagggatataataccaaatggccataagcaagaaggccag
ggaaatttgagattagcttcttcacaaccattactacctgacattggtagacagttcact
aacaatctgaaaaatattgctgatatcatgtctgttccctcgccaccaacttcttctcac
aattcatcttcaaagccagttaaattggacagaaaggatactaatgcagttgggtcaagc
tctattgacagtaaaattgtggcaactgctacccaagcggtagatatggttggcccctcc
cgttcacatggtgcatggggagatcttgagcatctgtttgagggttatgatgacaagcaa
aaggctgctatccagagagaaagagcaagacggatagatgagcagaaaaaaatgtttgct
gcacgcaaactctgccttgttttggatttggatcacacgcttctgaattcagctaagttt
gtggaagtagatccagtgcatgatgaaattttgaggaagaaggaggaacaggatcgtgag
aaggcgcagagacatcttttccgatttcctcatatgggaatgtggaccaaactacggcct
ggggtctggaactttttggaaaaggccagcgagctctatgaacttcatttgtacacaatg
ggaaacaagttatatgcaacggagatggcaaaggttcttgatccaaaaggggttctgttt
gccgggcgagttctttctcgaggtgatgatggagaccccttggacggggaagaaagggta
cccaagagtaaggatctggagggtgttttgggcatggagtctgctgttgttataattgat
gattccatcagggtgtggccacataacaaaatgaacttgattgtcgtagaaaggtatact
tactttccatgtagtaggcgccaatttgggcttctgggtccttctcttctagagattgac
catgatgagagacctgaagatggtactttggcttcttcactggcggttatccagagaatt
catcaaacctttttctcccatcctgtattagatgaagtagatgttagaaatatcttggcc
tccgagcaacaaaggattttggctggttgccgtatagtgtttagcagggtttttccagtt
ggtgaggcaaatcctcacctgcatccgctgtggcagacagctgaacagtttggtgcggtg
tgcaccaaccagattgatgaacaggttacccatgtcgttgcaaactcgcttgggactgat
aaggtgaattgggctctctccactggcagattcgtggtccatccagggtgggtggaagca
tcggctctactttaccggagggcaaacgagcaggacttcgccattaaaccataa
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