Cucurbita pepo subsp. pepo (vegetable marrow): 111778657
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Entry
111778657 CDS
T05351
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1
KO
K03008
DNA-directed RNA polymerase II subunit RPB11
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020
RNA polymerase
cpep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111778657
09124 Replication and repair
03420 Nucleotide excision repair
111778657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111778657
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111778657
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111778657
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111778657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L_2
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
111778657
NCBI-ProteinID:
XP_023514374
LinkDB
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Position
LG17:5551140..5553083
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AA seq
116 aa
AA seq
DB search
MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA
YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY
NT seq
351 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtacccgatcgttacgagcgcttcgtcgtccccgagggcgccaagaaggtttca
tacgagagagacacgaagatcatgaacgcggcgactttcatcgtagagagagaggatcat
actatcggaaacatcatccgcatgcaacttcacagagatgataatgtgctgtttgctgcc
taccagcttcctcatcctcttaagtacagaatacttgttcggatacagacggctagccag
tcctcgccgatgcaggcatataatcaggctatcaatgatttggataaggagcttgacgtt
ttgaaatatgagctcgagggtgcgttttctaggttctcgaggacctattag
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