Cucurbita pepo subsp. pepo (vegetable marrow): 111778667
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Entry
111778667 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111778667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111778667
03041 Spliceosome [BR:
cpep03041
]
111778667
03009 Ribosome biogenesis [BR:
cpep03009
]
111778667
03016 Transfer RNA biogenesis [BR:
cpep03016
]
111778667
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111778667
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111778667
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111778667
Complex C
U4/U6.U5 tri-SnRNP related factors
111778667
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111778667
Transfer RNA biogenesis [BR:
cpep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111778667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111778667
NCBI-ProteinID:
XP_023514389
LinkDB
All DBs
Position
LG17:complement(2823464..2833760)
Genome browser
AA seq
993 aa
AA seq
DB search
MGSSKRKVGQNMPRESSPKHHKANAPAMVEDEPVACVHDVSYPEGSFNPLPSLSLSSSGG
KLEPAKVFPFSLDPFQSEAIKCLENGESVMVSAHTSAGKTVVASYAIAMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVTREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDFRPTPLQHYVFPSGGEGLYLVVDEKGHFREDSFQKALNALVPASDGDKKKENGKWQKS
LTLGKTGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNGDDEKASIET
IFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEK
LEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRCEDGDPENLLRNSFYQFQADRNIPNLE
KQVKTLEEERDSIVIEEEDSLKNYYDLLKQYKSLKKDIHDIVLSPRYCLPFLQPGRLVSI
ECNSYDVNSSTFSIKNQVTWGLIINFQRVKGIAEEDVSMKPESANYTVDVLTRCVVSKDA
IGKKTVKIVQLKEHGEPHVVSIPISQISTLASIRILIPNDLLPLEARENTLKKIFEVLSR
FPKGVPLLDPEEDMKIQSSSYRKAVRRTEALENLFDKHEVAKSTLVEQKLKALHLKQELT
AKIRSIKKTMRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSANELTLS
ELMLNGVFNDIKVEELISLLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLEC
KVEIDVEGFVNSFRADIMEVVYGWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIV
AAKAIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttcgaagagaaaagtgggtcaaaatatgcccagagaatcttcgccgaagcac
cacaaagctaatgcccctgccatggttgaagacgaaccagttgcgtgtgttcatgacgtg
tcctaccccgagggttcatttaatcctctcccatcattgagtctctcttcgtctggaggg
aagttggaaccggctaaggtgttccctttctctctggacccctttcagtctgaggctatc
aaatgcttagagaatggagaatctgtcatggtatctgctcatacatcagctggtaaaact
gtagtggcttcgtatgcaattgcaatgtctcttcggaataaacagcgtgtcatatatacg
tcaccaataaaggccctcagcaaccaaaaatatagggaatttaaggaagaattctcggat
gttggtttaatgactggggatgtaacaattgaaccaaatgcttcttgtctggtcatgacc
acagaaatttggcgtagcatgcagtacaaaggatcagaggtaacacgggaagtggcatgg
attatttttgatgaagtacattacatgcgtgatcgggagcgaggtgttgtttgggaagag
agcattgtcatggctccaaagaatgctcgatttgtcttcctctcagcaactgtaccaaat
gcaaaagaatttgctgactgggttgcaaaggtccaccaacaaccatgtcatattgtttat
actgactttcgaccaacacctcttcaacactatgttttcccatccgggggtgaaggctta
tatttggtggttgatgaaaagggacattttcgtgaagatagctttcaaaaagctttaaat
gcacttgtccctgctagtgatggtgacaagaaaaaggagaatgggaagtggcagaagagt
ttaactttgggcaaaactggcgaagagagtgatatatttaagatggtgaagatgataatt
cagcgtcaatatgatccagttatacttttcagttttagcaaaagagaatgtgaatttctt
gcaatgcagatggccaaattggatctcaatggtgatgatgaaaaggcgagcatagaaacc
atcttttggagtgccatggatatgctttcagatgatgataagaagcttcctcaggtttca
aatatgttgcctctcttgaaacgtggaataggtgtccaccattctggcttgctccctatt
ttgaaggaggtgattgagatattatttcaagaagggctaatcaagtgtttgtttgccaca
gagaccttcagcattggtttaaacatgccagcaaaaactgttgtcttcagtaatgtccgt
aagtttgatggagataaatttagatggttatcaagtggtgagtatatacaaatgagtggt
cgagctggacggagaggaattgataaacgtggaatatgtatccttatggtggatgagaag
ctggaaccatcaacggctaaaatgatgcttaaaggaaatgctgattgcttgaacagtgct
ttccacttgagctataacatgctcttaaatcaaatccgttgtgaagatggcgatcctgaa
aatctgctgcgcaattccttctatcagttccaagccgaccgcaacatacctaatctcgag
aaacaagtgaaaacccttgaagaggagagggattccatagtgattgaagaggaagatagt
ttgaaaaattattatgatttgctaaagcagtacaaaagtttgaaaaaggatatccatgat
attgtcttgtctcctagatactgcttgccatttctacaacctggcaggcttgtatctatt
gaatgcaacagttatgatgtgaattcttccactttctccattaaaaaccaggttacgtgg
ggattgataattaattttcaaagggtgaaaggtattgctgaagaggatgttagcatgaaa
ccggaatctgctaactacactgtggatgttcttactagatgtgttgtcagtaaagatgcc
atagggaaaaaaactgttaagattgttcaattgaaagagcacggagaacctcatgttgtt
tccattccaatctctcagatcagtactttagccagtattcggatactcatacccaatgat
ctcttgccgttggaagctcgagaaaatacattgaagaagatttttgaagttctatcaaga
tttccaaagggtgtgccccttctagatccggaagaggacatgaaaattcaaagtagttca
tacagaaaggcagttcgtagaacagaggccttggagaacctctttgacaagcatgaggtg
gcaaaatcaacacttgttgagcagaagctcaaagctttgcatttgaagcaagagttgacg
gctaagatcaggtcaattaagaaaacaatgcgttcttcttctgcattggctttcaaagat
gaactgaaggccaggaagcgagtactgcggaggcttggttacatcacaagtgatgacgtt
gtggaattgaaagggaaggttgcttgtgaaatcagtagtgcaaatgaattgacactttca
gagctgatgttgaatggggttttcaatgacataaaagtggaggaacttatctctctccta
tcttgttttgtgtggcaagagaaacttcaggatgcagcgaagcctagggaagagcttgag
ctgctattcattcaattacaagacacagctcgaagggtcgctaaggttcagcttgaatgc
aaggtcgagattgatgtggaagggtttgtgaattcatttagagcagatattatggaggtt
gtgtatggttgggcaaaaggatcaaagttctatgagataatggaaataacgcaggttttt
gagggaagcttgataagagcaattagaagactggaggaagtcttgcaacaactaatagtg
gcagcaaaggccattggtgaaactgagcttgaaaccaagtttgaagaggctgtttccaaa
atcaagagggacattgtctttgctgcttctctctacttataa
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