Cucurbita pepo subsp. pepo (vegetable marrow): 111778792
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Entry
111778792 CDS
T05351
Name
(RefSeq) 31 kDa ribonucleoprotein, chloroplastic-like
KO
K13126
polyadenylate-binding protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111778792
09123 Folding, sorting and degradation
03018 RNA degradation
111778792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111778792
03041 Spliceosome [BR:
cpep03041
]
111778792
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111778792
mRNA cycle factors
Stress granule specific factors
111778792
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Complex C specific factors
111778792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_RdRP1_2
RRM_10
Motif
Other DBs
NCBI-GeneID:
111778792
NCBI-ProteinID:
XP_023514534
LinkDB
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Position
LG17:complement(5399878..5401177)
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AA seq
158 aa
AA seq
DB search
MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS
VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
AIEKLNEGLGFKPQFEALDNLGLGPSPNSNLLIVWAWV
NT seq
477 nt
NT seq
+upstream
nt +downstream
nt
atggcttccatctctgccgtattatcgccaacgaatctcatccacagttccataaaaccc
gccgaaatccttctcacatcagtctcatttcaccgccgtcgtacccataccttcctccgc
ctatctcccggtcgccccacgagactcttcgcggcgcttactgctcaggattccagttca
gtggcggaaaggaaattgtacgtcgggaatatacctagaaatgtggataatgaggagctc
aagcggattgttgaagaacatggggctgtggagaaggctgaggtcatgtatgacaaatac
tctggaagaagccgcaggtttgcctttgttaccatgaaaacggttgacgacgcaaatgca
gcaattgagaaactgaatgaagggcttgggtttaagccccaattcgaagctcttgataat
ttgggcttgggcccaagtcctaattcgaatctcttgatagtttgggcttgggtttaa
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