KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111779021
Entry
111779021         CDS       T05351                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111779021
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111779021
   03041 Spliceosome [BR:cpep03041]
    111779021
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     111779021
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111779021
Spliceosome [BR:cpep03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    111779021
SSDB
Motif
Pfam: RRM_1 RRM_7 Nup35_RRM_2
Other DBs
NCBI-GeneID: 111779021
NCBI-ProteinID: XP_023514818
LinkDB
Position
LG17:3553861..3556569
AA seq 330 aa
MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS
GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN
KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT
AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI
NGIGRYGMTGYGVPTCYGCTMAERYHPYWY
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcggaagaaaagaatttcaatgccgaccataacgcttaccatggcggcgacggtgcc
gtccaaatgtacgatcagcaggatcggtttgaattggggagtgaattggaaggaggcaat
gcagatagtacaggaggtgaagtaaagcattcgacgagccattatgattcttcgtccagt
ggcaagcttttcgttggaggcgtttcttgggagaccactgaagagacctttagtgattac
ttcagcaagtatggagaaatagctgattcagttataatgatggacaaacacactggaagg
ccacgcgggtttggttttgtaacgttttgtgatccttcagttgctgacatggttctgaat
aaagaccatgttatagatggcagaacggtggaagtgaagagaacagttccgagggctgat
acgaacgataaattggtatcaaggacaaagaaaatttttgttggtggaattccacctgct
ttgactgaagatgcgtttaaggtctacttctcttcgtttggtactattaccgaacaccaa
atcatgatagactatagaacgaagcggtctagaggatttggatttataacttttgagaac
gaagatgcagttgaaagtatattcgctggaaacgaaaaacatgagcttggaggcaagcag
gtggaaatcaagaaggctataccaagaagagtttcttatgattcacatagtaacaatact
gcagcaccaccttcttcaggatatggcatgtataaatgtgaaggcttatatgatgataaa
atgggcagaccttttggacggtatgatgtatatgcaccctttggcgggtacggtgggaac
tatgccaatttctacggtgcatacaattacggttttggttatggtggcccgatgtatata
aacggtatcggtagatatgggatgactggttacggtgtccccacttgctatggttgtaca
atggctgaaagataccatccatattggtattga

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