Cucurbita pepo subsp. pepo (vegetable marrow): 111779302
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Entry
111779302 CDS
T05351
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111779302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111779302
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111779302
mRNA degradation factors
5'-3' decay
Lsm complex
111779302
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
111779302
NCBI-ProteinID:
XP_023515193
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Position
LG17:complement(3338210..3344058)
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AA seq
128 aa
AA seq
DB search
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK
RLEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagcgcggaagatatttacctttcaacttctcttgccaattaccttgac
aagaaggttcttgtactacttcgagatggtcgaaagctattaggaatcctccgttcattc
gatcaatttgcaaatgctgttcttgaaggatcctgtgaaagagtgattgttggtgacctt
tacagcgatattcctttaggtctctatgtaattcgaggcgaaaacgtcgttttactgggc
gagctgaacatggagaaagaggagctccctccacacatgactcatgtctctgctatggag
attaaaagggctcaaaaagcagagagagaggctacagatcttaaagggacaatcaggaaa
agacttgagttccttgatctggactaa
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