Cucurbita pepo subsp. pepo (vegetable marrow): 111779334
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Entry
111779334 CDS
T05351
Name
(RefSeq) probable helicase CHR10 isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111779334
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111779334
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
Motif
Other DBs
NCBI-GeneID:
111779334
NCBI-ProteinID:
XP_023515240
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Position
LG17:7939012..7947954
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AA seq
871 aa
AA seq
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MNYERRLKAAAKLILLHDSESDNSPKSCPDVGVTATLKPYQVEGVLWLIRRYHLGVNAIL
GDEMGLGKTLQAISFLSYLKVHQISPGPFLVLCPLSVTDGWVSEIVRFAPHLNVLQYVGD
KETRRNSRRRIFEHATSQSVTDVMLPFDVLLTTYDIALIDQDFLSQIAWQYAVIDEAQRL
KNPSSVLYNVLKERFLIPRRLLMTGTPIQNNLSELWALLHFCMPSVFGTLDQFISTFKEA
GDLTSGHGKIHGNGQFKSLKYILSAFLLRRTKAKLSESGVLLLPPLTEITVMVPLVNLQR
KVYMSILRKELPKLLALSSGSSNHQSLQNVVMQLRKACSHPYLFPGIEPEPYEEGEHLVQ
ASGKLVILDQVLQKLHESGHRVLLFAQMTHTLDILQDFLELRNFSYERLDGSIRAEERFA
AIRSFSLNCSGSSQTTRNDAFVFLISTRAGGVGLNLVSADTVIFYEQDWNPQVDKQALQR
AHRIGQINHVLSINLVTAQTIEEVIMRRAERKLQLSKNVIGEDYIDEEAEEIAGNETGDL
RSIIFGLHIFDQGQMDNEKSGEFEASNVSAMAEKVVAVRHKKVSNKDDASFLVNTMTLSN
GCDLPIQEGTISVNFDPGVDEASYRSWIEKFKEASQSGANQIMELENRKTLSRDKSLKLE
DVKKKAEEKKLAKWEALGYHSLSVEDPILPLDSDLISDSGSVHFVYGDCTHPSRNCISEP
TIIFSCVDDSGSWGHGGMFDALAKLSDSIPSAYERASEFRDLHLGDLHLIKLEDNKEQSD
KAPQWVALGVVQSYNPRRKVPRSKISLPDLENCILKASSAASQHSASIHMPRIGYQDGSD
RSEWYTVERLLRKYASIYSIKIHVYYYRRTS
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgagagaaggctaaaagcagcggcgaagctcatacttctccatgattctgag
tccgacaactccccgaagtcctgcccggacgtcggagttacggcgactctgaagccctac
caagtcgaaggagttctatggctaattcggcgatatcatcttggcgtcaacgctattctt
ggtgatgagatggggctggggaagacattgcaagctatttcttttctgagttacttgaag
gtccatcagatatcacctggcccatttttggtattatgtcctttgagcgttacagatggt
tgggtatctgagattgtcagatttgctcctcatctaaatgttcttcagtatgttggagat
aaagaaactcgacgaaattctcgcaggcgcatttttgagcatgcaacatcacaatcagtg
actgatgtcatgttgccttttgatgttctgttgacaacgtatgacatagcattgatagat
caagacttcctctctcagatagcctggcagtatgctgtcattgatgaagcacagagactt
aaaaacccttcaagtgttctgtacaatgtacttaaagagcgttttcttatcccgaggcgg
ttattgatgactggaactcctattcagaacaatctcagtgaactttgggccttattgcat
ttctgcatgccttcagtgtttggaacactggatcagtttatttctacgttcaaggaagct
ggagatcttacttctggtcatggaaaaattcatggaaatgggcaatttaagagtttaaag
tatatactatcagccttccttttgagaagaacaaaagccaagcttagtgaatctggagtt
ctgttgctcccaccacttactgagataacagtgatggtaccattggttaaccttcaaaga
aaggtctatatgtcaatattgaggaaagagctgcctaaactacttgcactttcttctggt
tcctcaaaccaccaatcgttacagaatgtcgtgatgcaacttcgaaaagcttgtagccat
ccttatctttttcctggtattgagcctgaaccttatgaagaaggcgagcacctggttcag
gctagcggcaagcttgtgattctagatcaagtacttcagaaactacatgagtctggacat
cgtgtcctcttatttgctcagatgacccatacacttgatatattacaggacttcttggag
ttgcggaatttttcctatgagcgtcttgatggatcaattcgagccgaggagcgttttgct
gcaatcaggagcttcagcttgaattgtagtgggagttctcaaacaacccgtaatgatgca
tttgtttttttgatctctacaagagccgggggagttggtttgaatctagtgtcggctgat
acggttatattctatgaacaagattggaatccacaggtggacaagcaagctttacaaagg
gcacatcgaattggtcaaataaatcatgtgttgtctataaacttagttacagcccaaact
atcgaagaagttattatgcgaagggcagaaagaaagttacaacttagcaaaaacgttatt
ggtgaagattatatagatgaggaagcagaagaaattgcagggaatgaaactggtgacttg
agatcgatcatatttgggttacatatttttgatcaaggtcaaatggacaatgaaaaatca
ggggagtttgaggcgtcaaatgtcagtgcaatggctgaaaaagttgttgcagtacgccat
aaaaaagtatcaaacaaggatgatgcaagctttttggtcaatacaatgaccttatcaaat
ggttgtgatcttcctattcaagaaggtactatctcggtcaattttgacccaggcgttgat
gaggcgtcgtatcgctcttggatagagaagttcaaggaagcatcccaatctggtgctaac
caaatcatggagttggaaaaccggaaaactttatctagagataagagcctaaaacttgag
gatgtaaagaagaaagcagaagaaaagaaactggcaaaatgggaagcccttgggtaccat
tcgttatctgttgaagacccaatcttgcctcttgatagtgatctaatttcagattctggc
tctgttcattttgtctatggggactgcacacatccgtcaaggaattgtatatctgagcct
acaatcatattcagttgtgttgacgattctggaagctgggggcatggcggaatgtttgat
gctctggcaaagctttctgatagcatcccttctgcctatgaacgagcttctgaatttagg
gacctacatcttggtgatcttcatctcataaaactcgaggacaacaaggaacagagcgat
aaagctcctcaatgggttgctttgggtgttgtacaatcttataatccgaggcggaaagtc
cccagaagcaagatttctcttccagatttggagaactgcatattaaaagcatcatctgca
gcgtcgcaacattctgcttcaatccacatgccgcgtattggttaccaagacggatcagat
cgctccgagtggtacaccgtggaacgtcttctccgaaaatacgcctccatctacagcatt
aaaatccatgtgtactactaccgaaggacatcttga
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